TABLE 2.
Codon usage bias and G+C content of the S. enterica pduABCDEGHJKLMNOPQSTUVWX coding regions
ORF | CAIa | % G+C contentb | % G+C content by positionc
|
||
---|---|---|---|---|---|
1st | 2nd | 3rd | |||
pduA | 0.297 | 53 | 67 | 41 | 52 |
pduB | 0.131 | 60 | 63 | 48 | 70 |
pduC | 0.463 | 57 | 61 | 41 | 69 |
pduD | 0.372 | 57 | 63 | 42 | 66 |
pduE | 0.432 | 56 | 63 | 43 | 63 |
pduG | 0.332 | 60 | 71 | 44 | 64 |
pduH | 0.280 | 58 | 68 | 42 | 63 |
pduJ | 0.421 | 56 | 69 | 44 | 57 |
pduK | 0.309 | 56 | 64 | 48 | 58 |
pduL | 0.290 | 60 | 70 | 42 | 69 |
pduM | 0.367 | 62 | 73 | 41 | 71 |
pduN | 0.213 | 62 | 68 | 50 | 68 |
pduO | 0.344 | 62 | 66 | 49 | 69 |
pduP | 0.386 | 59 | 59 | 46 | 71 |
pduQ | 0.349 | 60 | 63 | 45 | 73 |
pduS | 0.316 | 62 | 70 | 46 | 69 |
pduT | 0.302 | 59 | 61 | 43 | 72 |
pduU | 0.316 | 56 | 57 | 44 | 67 |
pduV | 0.318 | 58 | 57 | 46 | 71 |
pduW | 0.276 | 53 | 60 | 41 | 58 |
pduX | 0.264 | 56 | 60 | 45 | 63 |
cob operon | 56 | 63 | 44 | 61 | |
Typical gene of S. enterica | 0.2–0.8 | 54 | 58 | 44 | 58 |
The codon adaptation index (CAI) was determined as described previously (45).
Percent G+C content of the indicated coding sequence.
Percent G+C content of the first, second, or third codon position of the indicated coding sequence.