Skip to main content
. 2005 May 9;102(20):7245–7250. doi: 10.1073/pnas.0502323102

Table 1. Features of V region sequences amplified from SSPE brain CD38+ population.

Group CD38+ Vh CDR3 Abundance Germ line Family Percent ID Vk CDR3 Vλ CDR3 Germ line Family Percent ID
1 ALKKGEGGLRFLELYYFD 10 DP47 Vh3 92.1 QTWGSGMGV Loc4b Vλ4a 93.7
ALKKGEGGLRFLELYYFD 3 DP47 Vh3 92.1
ALKKGEGGLRFLELYYLT 1 DP47 Vh3 92.1 QQNYSSPQT DPK24 Vκ4 (t)
2 LPAAGPRSFFETYNWGMD 8 DP79 Vh4 93.6 AAWDDSLNAWV DPL2 Vλ1 97
LPADGPRSFFETYNNGMD 1 DP79 Vh4 93.6 AAWDDSLNAWV DPL2 Vλ1 97
LPAAGPRSFFETYNWGMD 1 DP79 Vh4 93.6
3a IRAGAFD 2 DP31 Vh3 95.2 MQALQTFTF DPK15 Vκ2 99.7
3b IRAGAFD 4 DP31 Vh3 95.2 MQATQSWTF DPK16 Vκ2 98.2
IRAGAFD 1 DP31 Vh3 95.2
IRAGAFD 1 DP31 Vh3 95.2 (m)
4 DFTSDSRGPLGWFD 4 DP79 Vh4 93.9 YSTDSSGDHRV Loc3p Vλ3 98.1
DFTSDSRGPLGWFD 1 DP79 Vh4 93.9
5 GGLAARARLVLARMD 3 DP63 Vh4 93.8 QQSYNTPITF DPK9 Vκ1 95.1
GGLAARARLVLARMD 1 DP63 Vh4 93.8
6 VRATVLTGTSMD 2 DP58 Vh3 91.8 GADHGSGSNFVWV DPL22 Vλ9 97.6
VRATVLTGTSMD 1 DP58 Vh3 91.8
7 DTGGSGSNYYHYGMD 2 DP10 Vh1 93.2
DTGGSGSNYYHYGMD 1 DP10 Vh1 93.2 QQYNAWPPALT DPK21 Vκ3 (t)
8 DRGGESDYDVGRGYSDHYGMD 2 DP71 Vh4 86.9 QQCGFSPKT DPK22 Vκ3 92.5
9 DQERGTILTYSDMD 2 DP47 Vh3 95.9 LQHNSYPHFRRR* DPK3 Vκ1 95.5
10 DQVPVNNWFD 2 DP14 Vh1 95.2 (m)
11 SLTMIRGVMAFFD 2 DP25 Vh1 87.6 QQTYSSPSTF DPK9 Vκ1 90.9
DQVIYTGWSD 1 DP47 Vh3 91.2 CLYAGSTTWV DPL10 Vλ2 96.3
GYYDSTGYKSAND 1 DP14 Vh1 94.0 QQTYSSPSTF DPK9 Vκ1 90.9
LKSRIARGSYYQYFMD 1 DP27 Vh2 93.1
SADTSTAYYGLD 1 DP47 Vh3 96.6 LQDYNYPLTF DPK3 Vκ1 99.2
STGTDYYSYYMD 1 DP73 Vh5 86.6 YSTDTSGNFRV Loc3p Vλ3 99.2
EGQLALDQYYYYYMD 1 DP50 Vh3 96.3 NSYTSISTVV DPL11 Vλ2 93.6
DRTGYTSFLFD 1 DP31 Vh3 90.0 SSYAGRNKGYV DPL12 Vλ2 96
DPEEQWLADYFD 1 DP47 Vh3 97.6 MQATQSWTF GTWDSSLSARV DPL5 Vλ1 98.9
VEVGPNEDFYMD 1 DP88 Vh1 90.1 QQSYSFPWTF DPK9 Vκ1 89.4
EVAGGADIEVVPAAIGVDYHYGMD 1 DP79 Vh4 97.3 QSADSSGSYKV (t)

Each line identifies the CDR3 amino acid sequence and prevalence of each distinct H chain clone, the germ-line family, most homologous germ-line segment, percent identity to the closest germ-line segment, and the associated L chain amplification for that clone. *, an in-frame stop codon; (m), a mixed sequence that could not be further analyzed; (t), a truncated sequence.