| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| MLH1 clone ES05 (1:100) | Leica | Lot no. 6063898 (RRID:AB_1055422) |
| MSH2 clone 79H11 (undiluted) | Leica | Lot no. 72212 |
| MSH6 clone EP49 (1:80) | Dako | Cat no. 1164717 (RRID:AB_2889975) |
| PMS2 clone EP51 (1:50) | Dako | Cat no. 1160500 (RRID:AB_3331634) |
| Biological samples | ||
| Tumor samples from SCOT trial | SCOT trial (ISRCTN59757862) | Iveson et al.37 |
| Tumor samples from QUASAR2 trial | QUASAR2 trial (ISRCTN45133151) | Kerr et al.38 |
| Software and algorithms | ||
| R version 4.2.2 (2022-10-31) | Comprehensive R Network | https://www.r-project.org/ |
| Tidyverse version 1.3.2 | https://www.tidyverse.org | |
| ggplot2 version 3.4.0 | https://ggplot2.tidyverse.org | |
| ggpubr version 0.4.0 | https://cran.r-project.org/web/packages/ggpubr/index.html | |
| cowplot version 1.1.1 | https://cran.r-project.org/web/packages/cowplot/index.html | |
| stringr version 1.4.1 | https://cran.r-project.org/web/packages/stringr/index.html | |
| riverplot version 0.1.0 | https://cran.r-project.org/src/contrib/Archive/riverplot/ | |
| corrplot version 0.9.2 | https://cran.r-project.org/web/packages/corrplot/corrplot.pdf | |
| ggcorrplot version 0.1.4 | https://cran.r-project.org/web/packages/ggcorrplot/ggcorrplot.pdf | |
| irr version 0.84.1 | https://cran.r-project.org/web/packages/irr/index.html | |
| irrCAC version 1.0 | https://cran.r-project.org/web/packages/irrCAC/index.html | |
| survminer version 0.4.9.oc | https://cran.r-project.org/web/packages/survminer/index.html | |
| Other | ||
| Hamamatsu NanoZoomer | Hamamatsu | N/A |
| NVIDIA GeForce RTX 2080 Ti 11 GB | NVIDIA | N/A |
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