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. 1978 Mar 1;169(3):543–558. doi: 10.1042/bj1690543

Pyruvate carboxylase from a thermophilic Bacillus. Studies on the specificity of activation by acyl derivatives of coenzyme A and on the properties of catalysis in the absence of activator

Susan M Libor *, Trichur K Sundaram *, Michael C Scrutton
PMCID: PMC1183827  PMID: 25648

Abstract

1. Oxaloacetate synthesis catalysed by pyruvate carboxylase from a thermophilic Bacillus in the absence of acetyl-CoA required addition of high concentrations of pyruvate, MgATP2− and HCO3, and at 45°C occurred at a maximum rate approx. 20% of that in the presence of a saturating concentration of acetyl-CoA. The apparent Km for HCO3 at pH7.8 was 400mm without acetyl-CoA, and 16mm with a saturating activator concentration. The relationship between reciprocal initial rate and reciprocal MgATP2− concentration was non-linear (convex-down) in the absence of acetyl-CoA, but the extent of deviation decreased as the activator concentration was increased. The relationship between reciprocal initial rate and reciprocal pyruvate concentration was non-linear (convex-down) in the presence or absence of acetyl-CoA. 2. The optimum pH for catalysis of oxaloacetate synthesis was similar in the presence or absence of acetyl-CoA. The variation with pH of apparent Km for HCO3 implicated residue(s) with pKa 8.6 in catalysis of the activator-independent oxaloacetate synthesis. 3. Linear Arrhenius and van't Hoff plots were observed for the temperature-dependence of oxaloacetate synthesis in the absence of acetyl-CoA over the range 25–55°C. Ea (activation energy) was 56.3kJ/mol and ΔH (HCO3) (enthalpy of activation) was −38.6kJ/mol. In the presence of acetyl-CoA, biphasic Arrhenius and van't Hoff plots are observed with a change of slope at 30°C in each case. Ea was 43.7 and 106.3kJ/mol above and below 30°C respectively. 4. Incubation of Bacillus pyruvate carboxylase with trinitrobenzenesulphonate caused specific inactivation of acetyl-CoA-dependent catalytic activity associated with the incorporation of 1.3±0.2 trinitrophenyl residues per subunit. Activator-independent catalysis and regulatory inhibition by l-aspartate were unaffected. The rate of inactivation of acetyl-CoA-dependent catalysis by trinitrobenzenesulphonate was specifically decreased by addition of acetyl-CoA and other acetyl-CoA and other acyl-CoA species, but complete protection was not obtained. 5. All alkylacyl derivatives of CoA tested activated Bacillus pyruvate carboxylase; acetyl-CoA was the most effective. The apparent Ka exhibited a biphasic relationship with acyl-chain length for the straight-chain homologues. Certain long-chain acyl-CoA species showed additional activation at a high concentration. Weak activation occurred on addition of CoA or adenosine 3′,5′-bisphosphate, but carboxyacyl-CoA species and derivatives containing a modified phosphoadenosyl group were inhibitory. Thioesters of CoA with non-carboxylic acids, e.g. methanesulphonyl-CoA, serve as activators of the thermophilic Bacillus and Saccharomyces cerevisiae pyruvate carboxylases, but as inhibitors of pyruvate carboxylases obtained from chicken and rat liver. 6. α-Oxoglutarate mimics the effect of l-aspartate as a regulatory inhibitor of the pyruvate carboxylases from both the thermophilic Bacillus and Saccharomyces cerevisiae. l-Glutamate was ineffective in both cases.

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Selected References

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  1. Ashman L. K., Keech D. B., Wallace J. C., Nielsen J. Sheep kidney pyruvate carboxylase. Studies on its activation by acetyl coenzyme A and characteristics of its acetyl coenzyme A independent reaction. J Biol Chem. 1972 Sep 25;247(18):5818–5824. [PubMed] [Google Scholar]
  2. Ashman L. K., Wallace J. C., Keech D. B. Densitization of pyruvate carboxylase against acetyl-CoA stimulation by chemical modification. Biochem Biophys Res Commun. 1973 Apr 16;51(4):924–931. doi: 10.1016/0006-291x(73)90015-6. [DOI] [PubMed] [Google Scholar]
  3. Barden R. E., Cleland W. W. 1-Acylglycerol 3-phosphate acyltransferase from rat liver. J Biol Chem. 1969 Jul 10;244(13):3677–3684. [PubMed] [Google Scholar]
  4. Barden R. E., Fung C. H., Utter M. F., Scrutton M. C. Pyruvate carboxylase from chicken liver. Steady state kinetic studies indicate a "two-site" ping-pong mechanism. J Biol Chem. 1972 Feb 25;247(4):1323–1333. [PubMed] [Google Scholar]
  5. Barden R. E., Taylor B. L., Isoashi F., Frey W. H., Zander G., Lee J. C., Utter M. F. Structural properties of pyruvate carboxylases from chicken liver and other sources. Proc Natl Acad Sci U S A. 1975 Nov;72(11):4308–4312. doi: 10.1073/pnas.72.11.4308. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Brock T. D. Life at high temperatures. Evolutionary, ecological, and biochemical significance of organisms living in hot springs is discussed. Science. 1967 Nov;158(3804):1012–1019. doi: 10.1126/science.158.3804.1012. [DOI] [PubMed] [Google Scholar]
  7. Cazzulo J. J., Stoppani A. O. The regulation of yeast pyruvate carboxylase by acetyl-coenzyme A and L-aspartate. Arch Biochem Biophys. 1968 Sep 20;127(1):563–567. doi: 10.1016/0003-9861(68)90263-4. [DOI] [PubMed] [Google Scholar]
  8. Cazzulo J. J., Sundaram T. K., Dilks S. N., Kornberg H. L. Synthesis of pyruvate carboxylase from its apoenzyme and (+)-biotin in Bacillus stearothermophilus. Purification and properties of the apoenzyme and the holoenzyme synthetase. Biochem J. 1971 May;122(5):653–661. doi: 10.1042/bj1220653. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Cazzulo J. J., Sundaram T. K., Kornberg H. L. Properties and regulation of pyruvate carboxylase from Bacillus stearothermophilus. Proc R Soc Lond B Biol Sci. 1970 Oct 13;176(1042):1–19. doi: 10.1098/rspb.1970.0030. [DOI] [PubMed] [Google Scholar]
  10. Coffee C. J., Bradshaw R. A., Goldin B. R., Frieden C. Identification of the sites of modification of bovine liver glutamate dehydrogenase reacted with trinitrobenzenesulfonate. Biochemistry. 1971 Sep 14;10(19):3516–3526. doi: 10.1021/bi00795a005. [DOI] [PubMed] [Google Scholar]
  11. Cánovas J. L., Kornberg H. L. Properties and regulation of phosphopyruvate carboxylase activity in Escherichia coli. Proc R Soc Lond B Biol Sci. 1966 Aug 16;165(999):189–205. doi: 10.1098/rspb.1966.0064. [DOI] [PubMed] [Google Scholar]
  12. Frey W. H., 2nd, Utter M. F. Binding of acetyl-CoA to chicken liver pyruvate carboxylase. J Biol Chem. 1977 Jan 10;252(1):51–56. [PubMed] [Google Scholar]
  13. Keech D. B., Farrant R. K. The reactive lysine residue at the allosteric site of sheep kidney pyruvate carboxylase. Biochim Biophys Acta. 1968 Feb 5;151(2):493–503. doi: 10.1016/0005-2744(68)90117-4. [DOI] [PubMed] [Google Scholar]
  14. Libor S., Warwick R., Sundaram T. K. Binding behaviour of pyruvate carboxylase from Bacillus stearothermophilus on sepharose--avidin. FEBS Lett. 1975 Sep 1;57(1):34–36. doi: 10.1016/0014-5793(75)80146-3. [DOI] [PubMed] [Google Scholar]
  15. Libor S., Warwick R., Sundaram T. K. Pyruvate carboxylase from Bacillus stearothermophilus: molecular size, biotin content and subunit constitution. Biochem Soc Trans. 1975;3(2):309–311. doi: 10.1042/bst0030309. [DOI] [PubMed] [Google Scholar]
  16. McClure W. R., Lardy H. A., Kneifel H. P. Rat liver pyruvate carboxylase. I. Preparation, properties, and cation specificity. J Biol Chem. 1971 Jun 10;246(11):3569–3578. [PubMed] [Google Scholar]
  17. O'Brien R., Chuang D. T., Taylor B. L., Utter M. F. Novel enzymic machinery for the metabolism of oxalacetate, phosphoenolpyruvate, and pyruvate in Pseudomonas citronellolis. J Biol Chem. 1977 Feb 25;252(4):1257–1263. [PubMed] [Google Scholar]
  18. Raison J. K. Temperature-induced phase changes in membrane lipids and their influence on metabolic regulation. Symp Soc Exp Biol. 1973;27:485–512. [PubMed] [Google Scholar]
  19. SEUBERT W., REMBERGER U. [Purification and mechanism of action of pyruvate carboxylase from Pseudomonas citronellolis]. Biochem Z. 1961;334:401–414. [PubMed] [Google Scholar]
  20. Scrutton M. C., Pearce P. H., Fatebene F. Pyruvate carboxylase: effect of reaction components and analogues of acetyl-coenzyme A on the rate of inactivation in the presence and absence of trinitrobenzene sulphonate. Eur J Biochem. 1977 Jun 1;76(1):219–231. doi: 10.1111/j.1432-1033.1977.tb11587.x. [DOI] [PubMed] [Google Scholar]
  21. Scrutton M. C. Properties of the activation of phosphoenolpyruvate carboxylase from Escherichia coli by acyl derivatives of coenzyme A. FEBS Lett. 1974 Nov 1;48(1):145–148. doi: 10.1016/0014-5793(74)81083-5. [DOI] [PubMed] [Google Scholar]
  22. Scrutton M. C. Pyruvate carboxylase. Studies of activator-independent catalysis and of the specificity of activation by acyl derivatives of coenzyme A for the enzyme from rat liver. J Biol Chem. 1974 Nov 25;249(22):7057–7067. [PubMed] [Google Scholar]
  23. Scrutton M. C., Taylor B. L. Isolation and characterization of pyruvate carboxylase from Azotobacter vinelandii OP. Arch Biochem Biophys. 1974 Oct;164(2):641–654. doi: 10.1016/0003-9861(74)90076-9. [DOI] [PubMed] [Google Scholar]
  24. Scrutton M. C., Utter M. F. Pyruvate carboxylase. IX. Some properties of the activation by certain acyl derivatives of coenzyme A. J Biol Chem. 1967 Apr 25;242(8):1723–1735. [PubMed] [Google Scholar]
  25. Scrutton M. C., White M. D. Pyruvate carboxylase from rat liver: catalytic properties in the absence, and at low concentrations, of acetyl-CoA. Biochem Biophys Res Commun. 1972 Jul 11;48(1):85–93. doi: 10.1016/0006-291x(72)90347-6. [DOI] [PubMed] [Google Scholar]
  26. Scrutton M. C., White M. D. Pyruvate carboxylase. Inhibition of the mammalian and avian liver enzymes by alpha-ketoglutarate and L-glutamate. J Biol Chem. 1974 Sep 10;249(17):5405–5415. [PubMed] [Google Scholar]
  27. Scrutton M. C., White M. D. Pyruvate carboxylase. Specific inactivation of acetyl coenzyme A-dependent oxylacetate synthesis during modification of the enzyme by trinitrobenzene sulfonate. J Biol Chem. 1973 Aug 10;248(15):5541–5544. [PubMed] [Google Scholar]
  28. Scrutton M. C., Young M. R., Utter M. F. Pyruvate carboxylase from baker's yeast. The presence of bound zinc. J Biol Chem. 1970 Nov 25;245(22):6220–6227. [PubMed] [Google Scholar]
  29. Sundaram T. K., Cazzulo J. J., Kornberg H. L. Synthesis of pyruvate carboxylase from its apoenzyme and (+)-biotin in Bacillus stearothermophilus. Mechanism and control of the reaction. Biochem J. 1971 May;122(5):663–669. doi: 10.1042/bj1220663. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Taylor H., Nielsen J., Keech D. B. Substrate activation of pyruvate carboxylase by pyruvate. Biochem Biophys Res Commun. 1969 Nov 20;37(5):723–728. doi: 10.1016/0006-291x(69)90951-6. [DOI] [PubMed] [Google Scholar]
  31. Utter M. F., Barden R. E., Taylor B. L. Pyruvate carboxylase: an evaluation of the relationships between structure and mechanism and between structure and catalytic activity. Adv Enzymol Relat Areas Mol Biol. 1975;42:1–72. doi: 10.1002/9780470122877.ch1. [DOI] [PubMed] [Google Scholar]

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