Table 1.
Values of several categories of sensitivity and specificity (Sn/Sp) and (Sn + Sp)/2 characterizing the accuracy of gene predictions produced for the group of ‘well-studied’ genomes by the eukaryotic GeneMark.hmm with models derived by both unsupervised and supervised training
| A.thaliana | C.elegans | D.melanogaster | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Unsupervised | Supervised | Unsupervised | Supervised | Unsupervised | Supervised | |||||||
| Nucleotide | 97.7 | 96.3 | 97.2 | 95.8 | 99.1 | 96.4 | 97.8 | 96.7 | 97.9 | 95.4 | 98.1 | 95.6 |
| 94.8 | 94.3 | 93.6 | 95.5 | 92.9 | 93.1 | |||||||
| Internal exons | 91.2 | 89.5 | 91.2 | 89.9 | 94.0 | 92.7 | 90.9 | 90.9 | 91.3 | 90.5 | 87.2 | 88.7 |
| 87.8 | 88.5 | 91.3 | 90.8 | 89.7 | 90.2 | |||||||
| Initiation sites | 80.1 | 78.3 | 80.1 | 76.0 | 85.8 | 77.4 | 79.2 | 73.3 | 83.9 | 78.7 | 83.4 | 78.9 |
| 76.5 | 71.9 | 68.9 | 67.4 | 73.5 | 74.3 | |||||||
| Termination sites | 87.5 | 85.3 | 88.3 | 83.5 | 95.1 | 85.2 | 94.0 | 86.8 | 89.2 | 83.2 | 89.5 | 84.2 |
| 83.1 | 78.6 | 75.3 | 79.6 | 77.2 | 78.8 | |||||||
| Donor sites | 94.0 | 92.2 | 94.0 | 91.9 | 96.2 | 93.5 | 93.7 | 92.6 | 92.8 | 90.0 | 91.3 | 90.2 |
| 90.3 | 89.8 | 90.8 | 91.4 | 87.2 | 89.1 | |||||||
| Acceptor sites | 94.0 | 92.1 | 93.6 | 91.4 | 97.3 | 94.5 | 95.2 | 94.0 | 93.0 | 90.0 | 90.5 | 89.2 |
| 90.2 | 89.2 | 91.6 | 92.8 | 87.0 | 87.9 | |||||||
Boldface highlights the higher value in comparison of unsupervised and supervised modes (ES-3.0 versus E-3.0).