TABLE 1 .
Notations used
Ne | Effective population size |
---|---|
r | Per-locus recombination rate per generation; R = 4Ner |
μ | Per-locus mutation rate per generation; θ = 4Neμ |
s | Relative fitness of the mutant; γ = 2Nes |
m | Migration rate (proportion of migrants in the subpopulation per generation); M = 4Nem |
D | No. of demes |
β | Population growth rate |
n | No. of sequences sampled |
S | Total no. of segregating sites in the sampled sequences |
Q | No. of replicates in the simulation study |
Rh | Recombination rate estimator from Hudson (1987) |
Rhw | Recombination rate estimator from Hey and Wakeley (1997) |
Λ | Test statistic of the CLRT |
Λ* | 95% critical value of the CLRT |
tbs | Time in the unit of 4Ne generations ago that the bottleneck happens |
tbe | Time in the unit of 4Ne generations ago that the population recovers from the bottleneck |
f | Ratio of the population size during bottleneck to the original size |