. 2003 Feb 24;100(5):2580–2585. doi: 10.1073/pnas.0438000100

Table 2.

Most significant motifs found by reduce analysis, for probed loci with 2-kb flanking sequence

Rank	Motif	r²	t	−log₁₀ (P value)	Matches	Loci with match
1	`AGAGAG`	0.08411	19.646	>16	6,958	2,677
2	`GAGAG`	0.08353	19.572	>16	22,454	4,084
3	`AGAGA`	0.07613	18.61	>16	25,640	4,120
4	`GAGAGA`	0.07043	17.846	>16	6,675	2,720
8	`AAGAGAG`	0.05598	15.788	>16	1,940	1,384
11	`GAGAGAG`	0.05345	15.406	>16	2,762	1,217
13	`AGAGAGC`	0.04817	14.585	>16	1,848	1,350
14	`AGAGAGA`	0.04673	14.353	>16	2,876	1,309
16	`AAGAGA`	0.04087	13.382	>16	7,993	3,373
17	`GAGAGAA`	0.03944	13.137	>16	1,731	1,333
22	`AAAGAGA`	0.03592	12.514	>16	3,054	2,023
26	`GAGAGCG`	0.03245	11.872	>16	2,125	1,528
28	`AGAGAGT`	0.03229	11.842	>16	1,178	981
35	`AGAGAA`	0.03012	11.424	15.5	8,221	3,418
36	`GAGAGC`	0.02949	11.302	15.2	7,275	3,269
42	`CGAGAGA`	0.02823	11.051	14.6	1,268	1,055

5	`CTCTC`	0.06802	17.514	>16	21,401	4,062
6	`TCTCT`	0.0619	16.653	>16	24,773	4,115
7	`CTCTCT`	0.06175	16.632	>16	7,068	2,711
9	`CTCTCTT`	0.05526	15.68	>16	1,861	1,339
10	`GCTCTCT`	0.05501	15.641	>16	1,772	1,307
12	`TCTCTC`	0.04922	14.751	>16	6,624	2,665
15	`TCTCTT`	0.04443	13.979	>16	7,390	3,298
18	`CTCTCTC`	0.03852	12.976	>16	2,742	1,150
19	`CTCT`	0.03762	12.818	>16	88,116	4,205
20	`GCTCTC`	0.03709	12.723	>16	6,627	3,103
23	`CGCTCTC`	0.03579	12.49	>16	1,858	1,325
31	`TCTCTTT`	0.03069	11.537	15.7	2,923	1,970
33	`TCTCTCT`	0.03017	11.435	15.5	2,971	1,300
34	`CTCTTT`	0.03017	11.435	15.5	8,940	3,540
44	`TTCTCT`	0.02798	11	14.4	7,486	3,313
46	`CGCTCT`	0.0274	10.882	14.2	5,904	2,986

30	`AAACAA`	0.03103	11.601	15.9	25,931	4,137
45	`AACAAA`	0.02752	10.906	14.2	25,282	4,122
49	`ACAAA`	0.02648	10.693	13.7	61,740	4,202
57	`AAAACAA`	0.02563	10.515	13.3	10,584	3,556

24	`TTGTT`	0.03248	11.878	>16	57,441	4,204
27	`TTGTTT`	0.03232	11.847	>16	23,214	4,121
43	`TGTTT`	0.02816	11.036	14.5	58,404	4,202
50	`TTTGT`	0.02648	10.692	13.7	59,213	4,203
52	`TTTGTT`	0.02636	10.667	13.6	22,839	4,111

32	`TACATA`	0.03065	11.528	15.7	14,749	3,790
40	`ATACATA`	0.02898	11.201	14.9	6,679	2,766
54	`ATACA`	0.02587	10.565	13.4	37,679	4,191
58	`ACATAT`	0.02559	10.507	13.3	13,943	3,864

39	`TATGTA`	0.02907	11.217	14.9	14,268	3,822
53	`ATATGTA`	0.02605	10.603	13.5	6,207	2,891