TABLE 3.
Corresponding regions of SCC12263 and SCCmeca
SCCmec type | Region B
|
Region D
|
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SCCmec
|
SCC12263
|
% Identity | SCCmec
|
SCC12263
|
% Identity | |||||||||
Starting nucleotide | Ending nucleotide | Length (nt) | Starting nucleotide | Ending nucleotide | Length (nt) | Starting nucleotide | Ending nucleotide | Length (nt) | Starting nucleotide | Ending nucleotide | Length (nt) | |||
Type I | 11508 | 15164 | 3,657 | 1117 | 4787 | 3,671 | 96 | 16921 | 23914 | 6,994 | 9018 | 16018 | 7,001 | 96 |
Type II | 32763 | 36040 | 3,278 | 1369 | 4644 | 3,276 | 73 | 17968 | 25508 | 7,541 | 8600 | 16017 | 7,418 | 80 |
Type III | 16364 | 19641 | 3,278 | 1369 | 4644 | 3,276 | 73 | 2395 | 9434 | 7,040 | 9542 | 16198 | 6,657 | 72 |
Type IVa | 1617 | 3110 | 1,494 | 3411 | 4890 | 1,480 | 97 | 6870 | 13699 | 6,830 | 9306 | 16018 | 6,713 | 79 |
Type IVbb | 4109 | 10371 | 6,263 | 9876 | 16018 | 6,143 | 80 |
Nucleotide positions were measured in the 5′ (starting nucleotide) to 3′ (ending nucleotide) direction.
For region B of this SCCmec type, no corresponding sequence was found.