. 2003 Jun 11;100(13):7449–7453. doi: 10.1073/pnas.1232475100

Table 1. SNPs and primers for the haplotyping assays.

SNP ID	Chromosome position	PCR primer 1	PCR primer 2	Extension primer	Terminator mix^*
rs289741	47282625	TCTACCAGCTTGGCTCCCTC	AAGTCCATCAGCAGCAGCAG	GGGAGTCAGCCCAGCTC	ACT
rs289742	47282337	ACTGGTGAGACAATCCCTTC	CCACTGGCATTAAAGTGCTG	AGCCACAGAAGAAGGACTCC	ACT
rs289744	47281997	TACCAGAAACCAGACCTCTG	AGTGCTGGACAGAAAGTGAG	TGAGGATGGTGGGAGGG	ACT
rs289744^†	47281997	TCTACCAGAAACCAGACCTC	AGTGCTGGACAGAAAGTGAG	ACCTCTGAGGGCCCCTTAC	CG
rs2228667^†	47282820	CTCGAGTGATAATCTCAGGG	AGGTAGTGTTTACAGCCCTC	TGATGATGTCGAAGAGGCTCATG	CG
rs5882^†	47284007	TTACGAGACATGACCTCAGG	GCATTTGATTGGCAGAGCAG	CTGCAGGAAGCTCTGGATG	CG
rs5882^‡	47284007	GCATTTGATTGGCAGAGCAG	TTACGAGACATGACCTCAGG	AGAGCAGCTCCGAGTCC	ACT
rs5880^‡	47285008	GCAGCACATACTGGAAATCC	TTTCTCTCCCCAGGATATCG	GCTTTTTCTTAGAATAGGAGG	ACT
rs5881^†	47288087	AGATCTTGGGCATCTTGAGG	ACCCCTGTCTTCCACAGGTT	TGGGCCTGGCTGGGGAAGC	CG
rs5881^‡	47288087	ACCCCTGTCTTCCACAGGTT	AGATCTTGGGCATCTTGAGG	TGTCTTCCACAGGTTGTCGGC	ACT
rs291044^†	47288647	GTAAAACTGCAGCTGAGGAG	TGACTAGGTCAGGTCCCCTC	GGAGTATTTAAAGGAGAGACACA CTAG	CG
rs291044^‡	47288647	TGACTAGGTCAGGTCCCCTC	GTAAAACTGCAGCTGAGGAG	CCCTCGTGCCACAGCCT	ACT
rs2033254^‡	47290114	GGACATCAAAGGAACAGGAC	ACTCACAATATTGGGCAGGC	CAAGGGGCTAAGGGAGAAG	ACT
IGR2198a_1^§	506266^¶	GGGTTGCATGAGCATTAAGT	CACATCAAGGATAAGACTGC	ATCTCTTCAGTAGACGAAC	AC
IGR2175a_2^§	495082^¶	TGGCCTTGATTCAAACCCTG	AGATGAAGGAAATCCCAAGG	TGCCACTAACATACATAGTAAC	AC
IGR2150a_1^§	482171^¶	CCTTGGCTTGATAGTCAAAC	ATTTGGAGGAGTGCAGAGAG	AGTCAAACTCTCACCAC	AC

ACT mix is ddATP/ddCTP/ddTTP/dGTP in which dd indicates the 2′,3′-dideoxynucleotide. Similarly, CG mix is ddCTP/ddGTP/dATP/dTTP.

^†

Multiplex assay 1.

^‡

Multiplex assay 2.

^§

^¶

Position of SNP from Daly et al. (23).