TABLE 1.
Major families of contiguous repeats and their copy numbers in the genome
| Designationa | No. of copies | No. of direct repeats (mean no.) | Sequence of direct repeatb |
|---|---|---|---|
| CR-41-A | 12 | 2-16 (8) | TGCAGGACGCGATTGTCAA·CTGATTCTTGCTTCCTGCACGA |
| CR-41-B | 1 | 4 (4) | GCTTGCAGGAAGCGATTTCG·GCAAAAAAATTCCTGTTTGCA |
| CR-41-C | 1 | 4 (4) | TGCAGGAAGCCGTTGTCAC·CTGACAATCACTCCCTGCACGA |
| CR-23-A | 14 | 3-14 (9) | TATCCTCTCAT·ATGAGACCATAG |
| CR-23-B | 5 | 5 (5) | ACTAAACTAT·ATACTTTGGTNNN |
| CR-22-A | 32 | 2-8 (5) | CGATTTATA·TATAAATCGAAAA |
| CR-22-B | 4 | 4-6 (5) | TATTTCCGTAT·ATACGGAAATA |
| CR-22-C | 2 | 4-5 (5) | AAACGTCT·AGACGTTTCGAGCA |
a
The number indicates the length of the repetitive element; the letter indicates the family designation. Not included in table are CR-23-C and -D and CR-22-D, -E, -F, -G, and -H.
b
A dot indicates the location of dyad symmetry; underlined bases indicate palindromic match(es).