Table 4.
Heuristic example of the failure of pairwise LD to capture higher-level LD. The four haplotypes occur with equal probability ¼ in the population. Pairwise LD, as measured by r2 (but true also of any measure of LD reviewed by Devlin and Risch 1995) fluctuates in a peculiar pattern and fails to capture the higher-level features of LD, namely that only 4 of the possible 32 haplotypes occur in the population
Loci | |||||
---|---|---|---|---|---|
Haplotypes | a | b | c | d | e |
1 | 1 | 1 | 1 | 1 | 1 |
2 | 1 | 2 | 1 | 2 | 1 |
3 | 2 | 1 | 2 | 1 | 2 |
4 | 2 | 2 | 2 | 2 | 2 |
Disequilibrium | |||||
Loci | a | b | c | d | e |
a | 0 | 1 | 0 | 1 | |
b | 0 | 0 | 1 | 0 | |
c | 1 | 0 | 0 | 1 | |
d | 0 | 1 | 0 | 0 | |
e | 1 | 0 | 1 |