TABLE 3.
Summary of the breadth of the CD8+ T-cell response after SITa
Patient | No. of peptidesb | Amino acid sequence | Frequencyc | Protein | Positions |
---|---|---|---|---|---|
103 | 6 | LRPGGKKKYKLKHIVWASRELERFAVNPGLL | 0.658 | Gag p17 | 21-51 |
6 | QPSLQTGSEELRSLYVNTAVATLYCVHQRIE | 0.644 | Gag p17 | 65-93 | |
6 | AMQMLKETINEEAAEWDRVHPVHAGPIAPGQ | 0.689 | Gag p24 | 197-227 | |
6 | DCKTILKALGPAATLEEMMTACQGVGGPGHK | 0.741 | Gag p24 | 329-359 | |
101 | 6 | MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIV | 0.689 | Gag p17 | 1-35 |
6 | WIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKT | 0.698 | Gag p24 | 265-303 | |
6 | ASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMM | 0.745 | Gag p24 | 309-347 | |
119 | 3 | LDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGL | 0.854 | Gag p24 | 13-50 |
2 | LLVQNANPDCKTILKALGP | 0.709 | Gag p24 | 321-339 | |
1 | EEMMTACQGVGGPGH | 0.629 | Gag p24 | 344-359 | |
114 | 1 | LKETINEEAAEWDRV | 1.238 | Gag p24 | 201-217 |
2 | IHSQRRQDILDLWIYHTQGYF | 1.455 | Nef | 101-121 | |
102 | 3 | MGARASVLSGGLEDRWEKIRKLRPGGKKKYKL | 0.154 | Gag p17 | 1-31 |
124 | 1 | EKAFSPEVIPMFSAL | 0.188 | Gag p24 | 161-175 |
Patient responses are listed from broadest to narrowest.
Number of peptides indicates the number of matrix peptides defining an epitope region.
Frequency indicates the mean cytokine response of matrix peptide(s) per epitope region.