Table 3.
The rmsd (Å) of the lowest energy conformation from the loops decoy set (Moult and James 1986; Fidelis et al. 1994)
PDB ID | Residue range | rmsd range | RAPDF | Atomic KBP | DFIRE-A | DFIRE-A1.45 | DFIRE-A1.70 | DFIRE-B |
3dfr | 20–23 | 0.75–4.58 | 0.88 | 0.88 | 0.75 | 1.63 | 0.75 | 4.17 |
3dfr | 27–30 | 0.81–3.47 | 0.87 | 1.69 | 1.69 | 1.69 | 1.10 | 1.27 |
3dfr | 64–67 | 0.89–4.19 | 2.32 | 2.61 | 1.24 | 2.41 | 1.14 | 1.82 |
3dfr | 120–124 | 0.57–2.91 | 0.75 | 1.28 | 1.18 | 0.62 | 1.18 | 1.25 |
3dfr | 136–139 | 1.39–2.15 | 1.57 | 1.71 | 1.54 | 1.54 | 1.67 | 1.66 |
2sga | 35–39 | 1.20–3.17 | 1.32 | 1.22 | 1.28 | 1.28 | 1.28 | 1.23 |
2sga | 97–101 | 0.60–3.34 | 0.79 | 3.34 | 0.63 | 0.63 | 0.61 | 1.08 |
2sga | 116–119 | 0.47–4.91 | 0.99 | 1.09 | 0.99 | 0.99 | 1.05 | 4.28 |
2sga | 132–136 | 0.97–2.58 | 1.29 | 1.56 | 1.62 | 1.62 | 1.42 | 1.53 |
2fbj | 265–269 | 0.96–3.90 | 3.90 | 3.67 | 1.03 | 2.15 | 1.03 | 2.15 |
2hfl | 264–268 | 1.11–2.81 | 1.46 | 1.50 | 1.50 | 1.50 | 1.50 | 1.58 |