Table 1.
Basic summary of platform contents
| Chromosome | Affymetrix | Agilent | Illumina | Nimblegen |
|---|---|---|---|---|
| 1 | 64442 | 17259 | 27151 | 30220 |
| 2 | 69304 | 17382 | 28903 | 32900 |
| 3 | 58067 | 14802 | 24393 | 27255 |
| 4 | 55531 | 12863 | 22136 | 25940 |
| 5 | 52788 | 12486 | 22016 | 24223 |
| 6 | 51362 | 12438 | 26824 | 23138 |
| 7 | 43909 | 12201 | 20022 | 20549 |
| 8 | 45407 | 10309 | 20369 | 19870 |
| 9 | 34991 | 8461 | 17551 | 15160 |
| 10 | 42890 | 10297 | 18063 | 17820 |
| 11 | 41597 | 10114 | 16916 | 17901 |
| 12 | 40517 | 10169 | 16965 | 17991 |
| 13 | 30495 | 7375 | 13134 | 13541 |
| 14 | 25712 | 7512 | 11140 | 12130 |
| 15 | 23131 | 7314 | 10540 | 10735 |
| 16 | 22875 | 5610 | 10454 | 10206 |
| 17 | 19375 | 6220 | 9990 | 10025 |
| 18 | 24091 | 5586 | 11407 | 10682 |
| 19 | 12122 | 4081 | 7251 | 6828 |
| 20 | 19498 | 4715 | 8659 | 8403 |
| 21 | 11510 | 3077 | 5982 | 4733 |
| 22 | 10590 | 3181 | 6209 | 4442 |
| X | 27536 | 10179 | 12556 | 19151 |
| Y | 996 | 1191 | 1412 | 1963 |
| Total | 828736 | 214822 | 370043 | 385806 |
For the probes used in this study (i.e., only 60-mer Agilent probes, and well-annotated Affymetrix probes), the number of features broken down by chromosome.