. Author manuscript; available in PMC: 2010 Dec 21.

Published in final edited form as: Cell. 2005 Sep 23;122(6):947–956. doi: 10.1016/j.cell.2005.08.020

Table 2. Examples of Inactive Homeodomain Genes Co-occupied by OCT4, SOX2, and NANOG.

Gene Symbol	Entrez Gene ID	Gene Name
ATBF1	463	AT binding transcription factor 1
DLX1	1745	distal-less homeobox 1
DLX4	1748	distal-less homeobox 4
DLX5	1749	distal-less homeobox 5
EN1	2019	engrailed homolog 1
ESX1L	80712	extraembryonic, spermatogenesis, homeobox 1-like
GBX2	2637	gastrulation brain homeobox 2
GSC	145258	goosecoid
HOP	84525	homeodomain-only protein
HOXB1	3211	homeobox B1
HOXB3	3213	homeobox B3
HOXC4	3221	homeobox C4
IPF2	3651	insulin promoter factor 2
ISL1	3670	ISL1 transcription factor, LIM/homeodomain (islet-1)
LBX1	10660	transcription factor similar to D. melanogaster homeodomain protein lady bird late
LHX2	9355	LIM homeobox 2
LHX5	64211	LIM homeobox 5
MEIS1	4211	myeloid ecotropic viral integration site 1 homolog (mouse)
NKX2-2	4821	NK2 transcription factor related, locus 2 (Drosophila)
NKX2-3	159296	NK2 transcription factor related, locus 3 (Drosophila)
ONECUT1	3175	one cut domain, family member 1
OTP	23440	orthopedia homolog (Drosophila)
OTX1	5013	orthodenticle homolog 1 (Drosophila)
PAX6	5080	paired box gene 6
TITF1	7080	thyroid transcription factor 1