Table 1.
Summary statistics of the RAD tags sequencing via Illumina (San Diego, CA)
| Feature | 305E40 | 67/3 |
|---|---|---|
| Illumina reads (million) | 10.90 | 12.12 |
| Mb of sequences | 13.30 | 13.82 |
| Total Mb after sequence editing | 17.50 | |
| Contigs | 38,935 | 38,941 |
| Average contig length (bp) | 351 | 368 |
| N501 (bp) | 362 | 382 |
| Contig length range (bp, min-max) | 218-585 | 218-579 |
| Singlets | 6,912 | 6,843 |
| Common Contigs between parents | 31,635 | |
| Number of sequences with SNPs | 5,174 | |
| Total SNPs (frequency) | 10,089 (1/1,241 bp) | |
| Total InDels (frequency) | 874 (1/14,325 bp) | |
1 N50: weighted median statistic such that 50% of the entire assembly is contained in the number of contigs equal to or greater than this value