Table 3.
Alignment Statistics
|
Celera assembler
|
Arachne
|
|||||
|---|---|---|---|---|---|---|
| Good | Mis-asm. | No match | Good | Mis-asm. | No match | |
| B. suis | 65 | 3 | 3 | 76 | 0 | 1 |
| S. oneidensis | 626 | 12 | 94 | 907 | 7 | 10 |
| S. aureus | 717 | 1 | 62 | 588 | 1 | 19 |
| S. epidermidis | 47 | 6 | 19 | 69 | 2 | 10 |
| Wolbachia | 83 | 24 | 958 | 139 | 5 | 533 |
Good, contigs that confirmed the reference; mis-asm, disagreements between a particular assembly and the reference—these are likely mis-assemblies in the assembly; no match, the number of contigs that did not align to the reference—most likely contaminants (e.g., Wolbachia is known to have a large amount of Drosophila contamination) or small mis-assembled contigs.