Table 3.
miRNA targets are enriched in the down-regulated genes on array
Down-regulated gene set |
Up-regulated gene set |
|||
Observed overlap | Expected overlap* | Observed overlap | Expected overlap† | |
EBV PAR-CLIP dataset | 940 | 705 | 118 | 674 |
TargetScan 5.2 predictions | 1,707 | 1,576 | 214 | 1,508 |
TargetScan 5.2 predictions of 10 highest expressing miRNAs | 737 | 527 | 82 | 504 |
DIANA-microT predictions of 10 highest expressing miRNAs | 275 | 210 | 34 | 198 |
*Based on 25.5% of all genes recognized by IPA software down-regulated in microarray. χ2 analysis indicates P value for observed enrichment ≤0.0001 in each case.
†Based on 24.4% of all genes recognized by IPA software up-regulated in microarray. χ2 analysis indicates P value for observed depletion ≤0.0001 in each case.