Table 1. Species alignment fractions.
The number of reads aligning to each replicon present in the synthetic microbial community are shown before and after filtering, along with the percent of total constituted by each species. The GC content (“GC”) and restriction site counts (“#R.S.”) of each replicon, species, and strain are shown. Bur1: B. thailandensis chromosome 1. Bur2: B. thailandensis chromosome 2. Lac0: L. brevis chromosome, Lac1: L. brevis plasmid 1, Lac2: L. brevis plasmid 2, Ped: P. pentosaceus, K12: E. coli K12 DH10B, BL21: E. coli BL21. An expanded version of this table can be found in Table S2.
| Sequence | Alignment | % of Total | Filtered | % of aligned | Length | GC | #R.S. |
|---|---|---|---|---|---|---|---|
| Lac0 | 10,603,204 | 26.17% | 10,269,562 | 96.85% | 2,291,220 | 0.462 | 629 |
| Lac1 | 145,718 | 0.36% | 145,478 | 99.84% | 13,413 | 0.386 | 3 |
| Lac2 | 691,723 | 1.71% | 665,825 | 96.26% | 35,595 | 0.385 | 16 |
| Lac | 11,440,645 | 28.23% | 11,080,865 | 96.86% | 2,340,228 | 0.46 | 648 |
| Ped | 2,084,595 | 5.14% | 2,022,870 | 97.04% | 1,832,387 | 0.373 | 863 |
| BL21 | 12,882,177 | 31.79% | 2,676,458 | 20.78% | 4,558,953 | 0.508 | 508 |
| K12 | 9,693,726 | 23.92% | 1,218,281 | 12.57% | 4,686,137 | 0.507 | 568 |
| E. coli | 22,575,903 | 55.71% | 3,894,739 | 17.25% | 9,245,090 | 0.51 | 1076 |
| Bur1 | 1,886,054 | 4.65% | 1,797,745 | 95.32% | 2,914,771 | 0.68 | 144 |
| Bur2 | 2,536,569 | 6.26% | 2,464,534 | 97.16% | 3,809,201 | 0.672 | 225 |
| Bur | 4,422,623 | 10.91% | 4,262,279 | 96.37% | 6,723,972 | 0.68 | 369 |