Table 1.
Results from simulation study with independently distributed variants
α12 | α13 | α23 | Mean F | Method | Mean | Median | SD | Mean SE | Coverage | Power |
---|---|---|---|---|---|---|---|---|---|---|
0 | 0 | 0 | 47.3 | 2SLS | 0.196 | 0.192 | 0.085 | 0.085 | 94.8 | 65.2 |
IVW | 0.196 | 0.192 | 0.085 | 0.078 | 92.6 | 70.1 | ||||
Likelihood | 0.200 | 0.197 | 0.087 | 0.082 | 94.2 | 69.1 | ||||
+0.08 | +0.1 | +0.12 | 126.9 | 2SLS | 0.199 | 0.197 | 0.052 | 0.051 | 95.0 | 98.3 |
IVW | 0.199 | 0.197 | 0.052 | 0.047 | 92.6 | 98.6 | ||||
Likelihood | 0.200 | 0.199 | 0.052 | 0.050 | 94.0 | 98.6 | ||||
−0.08 | +0.1 | +0.12 | 88.1 | 2SLS | 0.198 | 0.197 | 0.061 | 0.062 | 95.1 | 78.1 |
IVW | 0.198 | 0.197 | 0.061 | 0.057 | 93.0 | 81.6 | ||||
Likelihood | 0.201 | 0.199 | 0.062 | 0.060 | 94.2 | 80.9 | ||||
+0.08 | −0.1 | +0.12 | 74.4 | 2SLS | 0.198 | 0.196 | 0.068 | 0.067 | 95.0 | 86.6 |
IVW | 0.198 | 0.196 | 0.068 | 0.062 | 92.9 | 88.9 | ||||
Likelihood | 0.201 | 0.199 | 0.068 | 0.065 | 94.2 | 88.6 | ||||
+0.08 | +0.1 | −0.12 | 59.6 | 2SLS | 0.197 | 0.194 | 0.075 | 0.075 | 94.8 | 92.4 |
IVW | 0.197 | 0.194 | 0.075 | 0.069 | 92.8 | 93.6 | ||||
Likelihood | 0.201 | 0.198 | 0.076 | 0.073 | 94.2 | 93.4 | ||||
−0.08 | −0.1 | +0.12 | 45.8 | 2SLS | 0.197 | 0.193 | 0.085 | 0.086 | 95.3 | 28.9 |
IVW | 0.197 | 0.193 | 0.085 | 0.079 | 93.3 | 37.9 | ||||
Likelihood | 0.202 | 0.197 | 0.087 | 0.084 | 94.6 | 35.9 | ||||
−0.08 | +0.1 | −0.12 | 33.1 | 2SLS | 0.196 | 0.191 | 0.102 | 0.102 | 94.9 | 46.7 |
IVW | 0.196 | 0.191 | 0.102 | 0.093 | 92.7 | 53.8 | ||||
Likelihood | 0.203 | 0.197 | 0.105 | 0.100 | 94.4 | 52.2 | ||||
+0.08 | −0.1 | −0.12 | 23.0 | 2SLS | 0.190 | 0.183 | 0.123 | 0.124 | 94.7 | 64.3 |
IVW | 0.190 | 0.183 | 0.123 | 0.113 | 92.8 | 69.7 | ||||
Likelihood | 0.201 | 0.192 | 0.129 | 0.121 | 94.2 | 68.7 | ||||
−0.08 | −0.1 | −0.12 | 6.6 | 2SLS | 0.172 | 0.148 | 0.249 | 0.244 | 93.4 | 2.8 |
IVW | 0.172 | 0.148 | 0.249 | 0.217 | 92.1 | 10.9 | ||||
Likelihood | 0.221 | 0.180 | 0.357 | 0.285 | 94.6 | 5.7 |
Instrumental variable estimates of causal effect +0.2 from simulated data with and without gene–gene interactions using individual-level data (two-stage least squares method, 2SLS) and summarized data (inverse-variance weighted, IVW, and likelihood-based methods) with mean F statistic, mean and median estimates across 10,000 simulations, SD of estimates, mean SE of estimates, coverage (%) of 95% confidence interval, and power (%) at a 5% significance level