Table 3. Most associated SNPs^a with case status in primary analyses.

SNP	Chr	Clinical subgroup	P.LRT	OR	L95.OR	U95.OR	GENE	eQTLs^b
rs11641365	16	ADOS CSS RRB much higher than SA	3.19e-07	2.06	1.54	2.76	CTU2
rs2393895	10	Higher ADOS social affect impairment	2.23e-07	1.91	1.48	2.47	ZNF365
rs868914	10	Higher ADOS social affect impairment	2.48e-07	1.68	1.37	2.07	ZNF365
rs1867503	3	ASD paternal model	4.18e-07	1.55	1.30	1.84		Regulates TOPBP1
rs1867504	3	ASD paternal model	4.18e-07	1.55	1.30	1.84		Regulates TOPBP1
rs1409313	10	ASD paternal model	4.01e-07	1.75	1.40	2.18	CUEDC2	Regulates C10orf26
rs4773054	13	ASD paternal model	5.25e-08	2.66	1.83	3.86
rs4773054	13	Autism paternal model	7.28e-08	2.9	1.91	4.39

p<5×10^-7 and MAF>0.05 and positive effect of the rare allele

In cerebellum or parietal cortex according to scan database (www.scandb.org, (49))

Table 3. Most associated SNPsa with case status in primary analyses.