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. Author manuscript; available in PMC: 2015 Jun 19.
Published in final edited form as: J Med Chem. 1994 Mar 4;37(5):636–646. doi: 10.1021/jm00031a014

Structure–Activity Relationships of N6-Benzyladenosine-5′-uronamides as A3-Selective Adenosine Agonists

Carola Gallo-Rodriguez , Xiao-duo Ji , Neli Melman , Barry D Siegman , Lawrence H Sanders , Jeraldine Orlina , Bilha Fischer , Quanlong Pu , Mark E Olah §, Philip J M van Galen , Gary L Stiles §, Kenneth A Jacobson ‡,*
PMCID: PMC4474279  NIHMSID: NIHMS698956  PMID: 8126704

Abstract

Adenosine analogues modified at the 5′-position as uronamides and/or as N6-benzyl derivatives were synthesized. These derivatives were examined for affinity in radioligand binding assays at the newly discovered rat brain A3 adenosine receptor and at rat brain A1 and A2a receptors. 5′-Uronamide substituents favored A3 selectivity in the order N-methyl > N-ethyl ∞ unsubstituted carboxamide > N-cyclopropyl. 5′-(N-Methylcarboxamido)-N6-benzyladenosine was 37–56-fold more selective for A3 receptors. Potency at A3 receptors was enhanced upon substitution of the benzyl substituent with nitro and other groups. 5′-N-Methyluronamides and N6-(3-substituted-benzyl)adenosines are optimal for potency and selectivity at A3 receptors. A series of 3-(halobenzyl)-5′-N-ethyluronamide derivatives showed the order of potency at A1 and A2a receptors of I ~ Br > Cl > F. At A3 receptors the 3-F derivative was weaker than the other halo derivatives. 5′-N-Methyl-N6-(3-iodobenzyl)adenosine displayed a Ki value of 1.1 nM at A3 receptors and selectivity versus A1 and A2a receptors of 50-fold. A series of methoxybenzyl derivatives showed that a 4-methoxy group best favored A3 selectivity. A 4-sulfobenzyl derivative was a specific ligand at A3 receptors of moderate potency. An aryl amino derivative was prepared as a probe for radioiodination and receptor cross-linking.

Introduction

Two major subclasses of adenosine receptors, A1 and A2, have been defined, initially based on pharmacological distinctions1 and more recently by cloning.2,3 A1 receptors may couple to a variety of second messenger systems,4,5 including inhibition of adenylate cyclase, inhibition or stimulation of phosphoinositol turnover, and activation of ion channels.1,4 A2 receptors stimulate adenylate cyclase and can be further subdivided into high affinity A2a and low-affinity A2b subtypes. A novel rat A3 adenosine receptor subtype was defined as a result of cloning of cDNA coding for sequences resembling G-protein-coupled receptors.4,5 In the putative transmembrane domains (as defined by molecular modeling8,9 by analogy to bacteriorhodopsin), it showed 56% identity with the rat A1 receptor. Curiously, xanthines, which are the classical A1 and A2 antagonists, do not bind to rat A3 receptors.6,8 A3 receptors inhibit adenylate cyclase6 like A1 receptors and also stimulate phosphoinositide metabolism.10 This receptor is unrelated to the “A3 receptor” proposed by Ribeiro and Sebastiao.11

Activation of A3 receptors is associated with the immunosuppressive10 actions of adenosine. Fozard and Carruthers12,13 have attributed a xanthine-insensitive component of the vasodilatory effects of adenosine agonists to A3 receptor activation. The occurrence of A3 receptors in the brain6 and testes7 also suggests that it may be important in regulation of central nervous system (CNS) function and reproduction.

We recently reported that an N6-substituted adenosine derivative, N6-benzyl-5′-(N-ethylcarboxamido)adenosine, is the first selective agonist for the A3 receptor.8 In the same study a computer-based molecular model of the binding site based on a previous model of A1 receptors14 was proposed. Binding of the ribose moiety to the A3 receptor was proposed to closely resemble that of A1 receptors. In this study the structure of adenosine was modified synthetically on both the ribose and purine moieties in an effort to enhance potency and selectivity in A3 receptor binding.

Results and Discussion

5′-Uronamido and 5′-uronamido-N6-benzyl derivatives of adenosine (Figures 1-3) were synthesized (Table 4) and tested in radioligand binding assays for affinity at rat brain A1, A2a, and A3 adenosine receptors. The compounds were assayed for A1 affinity in rat cortical membranes using [3H]-N6-((R)-phenylisopropyl)adenosine15 and for A2a affinity in rat striatal membranes using [3H]CGS 21680.16 At A3 receptors it was necessary to use a cell line (CHO) in which rat brain A3 receptors were stably transfected.6 The radioligand used for binding to A3 receptors was the nonselective [125I]iodoAPNEA, as previously reported.6,8

Figure 1.

Figure 1

Synthesis of an adenosine aminoalkyl functionalized congener, which was found to bind weakly but selectively at A3 receptors.

Figure 3.

Figure 3

Synthesis of N6-benzyl-5′-N-alkyluronamides and related derivatives via the Dimroth rearrangement of N1-alkylated adenosine derivatives.

Table 4.

Characterization of Adenosine Derivatives

compd methoda % yield mp (°C) MS formula analysis
5 C 72 155–172 CI: 324 C17H25N7O6·1¼H2O C,H;Nf
6 C 42 130–140 FAB+ 424, 368b C17H25N7O6·½t-BuOH + ½H2O C,H,N
7 A 57 225 dec FAB+ 296, 160b C11H13N5O6·1½MeOH C,H,N
8 A 55 198 dec FAB+ 310 (MH+),b 174 C12H15N5O5·1½H2O C,H,N
9 D 28 158 dec CI: 325, 309, 273
10 B 60 140 dec FAB+ 444b C19H21N7O6·¾H2O C,H,N
11 B 45 198 dec FAB+ 444b C19H21N7O6·1½H2O C,H,N
12 B 40 207–208 370, 268, 254, 225 C17H18N6O4·¾MeOH C,H,N
13 A 46 114–116 384, 268, 254, 225 C18H20N6O4-H2O C,H,N
14 B 67 171–173 CI: 419/421 C18H19N6O4Cl·¼H2O C,H,N
15 A 78 170–172 462/464, 346/348,303/305 C18H19N6O4Br·¾H2O C,H,N
16 A 55 174–177 510 (M+), 394, 380, 351 C18H19N6O4I·½H2O C,H,N
17 A 39 ~125 dec 429, 313, 299, 271, 253 C18H19N7O6·H2O C,H,N
18 A 50 133–137 FAB+ 400, 241b C18H21N7O4·H2O C,H,N
19 D 93 132 dec FAB+ 442, 400 (MH – CH2=C=0)b C20H23N7O5·0.9MeOH + ¼CHCl3 C,H,N
20 A 76 128–129 FAB+ 399, 240b C19H22N6O4·1¼H2O C,H,N
21 A 60 ~110–120 452, 433, 336, 322, 293 C19H19N6O4F3·H2O C,H,N
22 A 83 123–124 418, 302, 288, 259 C18H19N6O4Cl·1¼H2O C,H,N
23 A 65 111–112 462/464, 346/348, 332/334, 303/305 C18H19N6O4Br·2H2O C,H,N
25 A 60 135 dec 399, 269, 240 C18H21N7O4·¾H2O C,H,N
26 A 51 132 dec CI: 526 C18H20N7O4I·1/10CHCl3 + ¾MeOH C,H,N
27 A 59 125 dec FAB+ 465b Et3N salt of C18H20N6O7S·2¼H2O C,H,N
28 A 29 230 dec FAB+ 465c C18H20N6O7S·3½H2O C,H,N
29 B 42 170–173 CI: 399 (MH+) C19H22N6O4·¼H2O C,H,N
30a A 60 135–138 413, 282, 268, 239 C20H24N6O4·¼H2O + ½MeOH C,H,N
30b A 66 130 dec 412, 282, 268, 239 C20H24N6O4·½MeOH C,H,N
31 A 68 192–196 416, 286, 272, 243 C19H21N6O4F·¼H2O C,H,N
32 B 62 199–200 CI: 433 (MH+) C19H21N6O4Cl C,H,N
33 A 42 196–197 476/478, 346/348, 332/334, 303/305 C19H21N6O4Br C,H,N
34 A 52 194.5–195 524, 394, 380, 351 C19H21N6O4I C,H,N
35 B 34 181 dec FAB+ 444b C19H21N7O6·¾H2O C,H,N
36 B 55 190–192 FAB+ 444b C19H21N7O6·⅕H2O C,H,N
37 B 49 196 dec FAB+ 444b C19H21N7O6·½H2O + ½MeOH C,H,N
38 A 47 167–168.5 412, 282, 268, 239 C19H21N7O6·¼H2O C,H,N
39 A 72 106–108 428, 298, 284, 255 C20H24N6O5 C,H,N
40 B 27 167–169 FAB+ 429, 256b C20H24N6O5·H2O C,H,N
41 B 14 250 dec 428, 284, 255 C20H24N6O5·¾MeOH C,H,N
42 B 59 178–180 410, 268, 254, 225 C20H22N6O4·½H2O C,H,N
51a D 53 87–94 CI: 354/356, 320 C14H15N5O4Cl·¾H2O C,H,N
51b D 69 88–92 CI: 368–370 C15H17N5O4Cl C,H,N
52a D 96 146–148 CI: 353 (M + NH4+), 336, 150 C14H17N5O5·¾H2O C,H,N
52b D 94 240–243 CI: 350,188 C15H19N5O5 C,H,N
57 D 99 135–137 CI: 140 (M + NH4+), 123 C7H11N2Cl·¼H2O C,H,N
63 D 40 >280 FAB+ 188e C7H9NO3S C,H,N
65 D 79 >280 FAB+ 266/268e C7H8NO3BrS C,H,N,S;Brg
66 D 63 >280 FAB+ 188, 171, 108e C7H9NO3S C,H,N,S
a

Methods: A: Synthesis as in Figure 2. If from chloropurine riboside and benzylamine derivative, percent yield is for both displacement and deprotection steps. For 7 and 8 percent yield refers to condensation and deprotection steps. B: Via Dimroth rearrangement, as in Figure 3. Percent yield calculated for both alkylation and rearrangement steps or for alkylation alone for compounds 10 and 11. C: Refer to Figure 1. D: Refer to text.

b

m-bullet matrix.

c

Noba (3-nitrobenzyl alcohol) matrix.

d

Accurate mass, measure (ppm from calculated) in FAB+ mode unless noted: 18, 442.1829 (−2.3); 27, 463.1016 (3.0) (FAB); 10, 444.1646 (3.1); 11, 444.1630 (−0.3).

e

Thioglycerol matrix.

f

N: calcd, 28.35; found, 27.18.

g

Br: calcd, 30.03; found, 29.56.

Ribose Modifications

The SAR for adenosine derivatives with modifications in the ribose moiety has been found to be similar for A3 receptors to that for A1 and A2a receptors.8 There is little toleration of substitution or deletion of the 2′- and 3′-hydroxyl groups, but there is considerable freedom of substitution at the 5′-position. 5′-Deoxy, 5′-thio ether, and 5′-uronamide substitutions are tolerated at A3 receptors.8

NECA, 3, was reported to be among the most potent known agonists at A3 receptors,6 although not A3 selective. NECA favors both A1 and A2a receptors vs A3 receptors by 1 order of magnitude in affinity. The 5′-uronamido group of NECA was varied (Table 1). The primary carboxamide, 1, was weaker than NECA at A3 receptors, with roughly the same selectivity ratios. The N-methylamide, 2, was the most favored 5′-uronamide in binding to A3 receptors. It was found to be nonselective but moderately potent (Ki 75 nM) at A3 receptors.

Table 1.

Affinities of 5′-Uronamide Derivatives in Radioligand Binding Assays at Rat Brain A1, A2, and A3 Receptorsa-c

graphic file with name nihms-698956-t0005.jpg

Ki (nM) or % inhibition
compd R1 R2 Ki(A1)a Ki(A2)b Ki(A3)c A1/A3 A2/A3
1 d H NH2 72.6 120 1410 ± 60 0.051 0.085
2 d Me NH2 83.6 66.8 72 ± 16 1.2 0.93
3 d Et NH2 6.3 10.3 113 0.071 0.091
4 d cyclopropyl NH2 6.4 13.4 1600 ± 70 0.0040 0.0084
5 H2NEt NH2 0% (10−5) 12.5% (10−5) 14700 ± 2540 >1 >1
6 t-BocNHEt NH2 0% (10−5) 0% (10−5) 18000 ± 4270 >1 >1
7 Me OH 0% (10−4) 6.2 ± 4.2% (10−4) 6220 ± 1220f >10 >10
8 e Et OH 44% (10−4) 31% (10−4) 5000 >1 >1
a

Displacement of specific [3H]PIA binding, unless noted, in rat brain membranes expressed as Ki ± SEM in nM (n = 3).

b

Displacement of specific [3H]CGS 21680 binding, unless noted, in rat striatal membranes, expressed as Ki ± SEM in nM (n = 3).

c

Displacement of specific binding of [125I] APNEA10 or [125I]-N6-(4-amino-3-iodobenzyl)adenosine-5′-N-methyluronamide28 from membranes of CHO cells stably transfected with the rat A3-CDNA, expressed as Ki ± SEM in nM (n = 3–5).

d

Values at A1 and A2 receptors are taken from Bruns et al.29 Ki values at A1 receptors are vs specific binding of [3H]-N6-cyclohexyladenosine. Ki values at A2 receptors are vs specific binding of [3H]NECA in the presence of 50 nM CPA in rat striatal membranes.

e

Values from ref 8.

f

Vs[125I]-N6-(4-amino-3-iodobenzyl)adenosine-5′-N-methyluronamide.

Two 5′-uronamide derivatives of ethylenediamine, 5 and 6, were synthesized (Figure 1) as functionalized congeners.17 They were found to be much less potent than NECA in receptor affinity, despite a relatively small added substituent (an amino group) in the case of 5. Although weak in receptor affinity, the derivatives were found to be A3 selective, indicating the possibility of achieving greater potency and selectivity by combining the 5′-N-(2-amino-ethyl)carboxamido modification with other modifications.

Inosine (9-β-d-ribofuranosylhypoxanthine) binds weakly to adenosine receptors, with Ki values at A1, A2a, and A3 receptors in the 20–50 μM range.8 The 5′-N-ethyluronamide derivative of inosine, 8, was also found to be a weak ligand with >20-fold selectivity for A3 receptors.8 The N-methyl analogue, 7, was synthesized (Figure 2) and provided an apparent improvement in selectivity, with approximately the same A3 affinity as the N-ethyl analogue, 8.

Figure 2.

Figure 2

Synthesis of 5′-N-alkyluronamide derivatives of inosine and of N6-substituted adenosine derivatives.

Purine Modifications

The 8-position of the purine moiety is not amenable to substitution in A3 receptor binding.8 The 2-position may be substituted without eliminating recognition at A3 receptors; however, among the few analogues examined there was no indication of enhancement of A3 selectivity.8

Modification of the N1-position (either oxidation to the N-oxide or 1-deaza analogues) is tolerated at A3 receptors.8 The 5′-N-ethyluronamide modification was combined with various changes at the N1-position. NECA N1-oxide, 9, was nonselective (Table 2), but the loss of potency versus NECA was greater for A1 and A2a receptors than for A3 receptors. To introduce larger groups, such as 2- and 4-nitrobenzyl, NECA was alkylated at the N1-position (general reaction shown in Figure 3) resulting in 10 and 11. The resulting potency at A1 and A2a receptors was not substantially different from NECA N1-oxide, but the potency at A3 receptors was increased by 1 order of magnitude. Thus, 10 and 11 displayed intermediate potency and some selectivity for A3 receptors.

Table 2.

Affinities of N1-Derivatives of Adenosine and Other Purines in Radioligand Binding Assays at Rat Brain A1, A2, and A3 Receptorsac

graphic file with name nihms-698956-t0006.jpg

Ki (nM) or % inhibition
compd R1 R3 Ki(A1)a Ki(A2)b Ki(A3)c A1/A3 A2/A3
9 d Et O 154 101 468 0.33 0.22
10 e Et CH3C6H4-4-NO2 341 ± 52 190 ± 52 60 ±3 5.7 3.2
11 e Et CH2C6H4-2-NO2 196 ± 52 83.5 ± 9.5 27 ±5 7.3 3.1
a

Displacement of specific [3H]PIA binding in rat brain membranes expressed as Ki ± SEM in nM (n = 3–4).

b

Displacement of specific [3H]CGS 21680 binding in rat striatal membranes, expressed as Ki ± SEM in nM (n = 3).

c

Displacement of specific binding of [125I]APNEA10 from membranes of CHO cells stably transfected with the rat A3-cDNA, expressed as Ki ● SEM in nM (n = 3).

d

Values from ref 8.

e

Elemental analysis consistent with neutral imino form.

The position of substitution causing the greatest selective enhancement of potency at A3 receptors was found to be the N6-position. We previously reported that among N6-aralkyl derivatives of adenosine, the benzyl group favored A3 receptor selectivity and that this modification was compatible with the 5′-N-ethylcarboxamide.8 Indeed, N6-benzylNECA, 29 (Table 3), was 14-fold selective for A3 receptors versus either A1 or A2a receptors. In this study we have modified both 5′-and N6-positions of 29 to enhance selectivity and potency.

Table 3.

Affinities of N6-Benzyladenosine-5′-uronamide Derivatives in Radioligand Binding Assays at Rat Brain A1, A2, and A3 Receptorsac

graphic file with name nihms-698956-t0007.jpg

Ki (nM) or % inhibition
compd R1 R5 Ki(A1)a Ki(A2)b Ki(A3)c A1/A3 A2/A3
12 H H 580 ± 99 423 ± 46 246 ± 35 2.6 1.7
13 Me H 898 ± 124 597 ± 42 16 ± 1 56 37
14 Me 3-Cl 916 ± 121 559 ± 78 21.9 ± 0.3 42 25
15 Me 3-Br 65 ± 2 64 ± 9 1.9 ± 0.3d 34 34
16 Me 3-I 54 ± 5 56 ± 8 1.1 ± 0.3d 49 51
17 Me 3-NO2 735 ± 5 441 ± 45 19 ± 1d 39 23
18 Me 3-NH2 1000 ± 60 794 ± 118 28 ± 13d 36 28
19 Me 3-NHCOCH3 2970 ± 330 988 ± 185 41.4 ± 0.7d 72 24
20 Me 3-CH3 322 ± 23 415 ± 33 10 ± 3d 32 42
21 Me 3-CF3 496 ± 50 574 ± 49 31 ± 6d 16 19
22 Me 4-Cl 478 ± 38 2730 ± 210 11 ± 10d 28 160
23 Me 4-Br 516 ± 38 2460 ± 380 12 ± 5d 43 200
25 Me 4-NH2 431 ± 45 1590 ± 180 14 ± 3d 31 110
26 Me 4-NH2-3-I 18.0 ± 5.0 197 ± 84 1.27 ± 0.18d 14 160
27 Me 3-SO3H·Et3N 19600 ± 2000 9070 ± 1150 1310 ± 170d 15 6.9
28 Me 4-SO3H·Et3N 0% (10−4) 0% (10−4) 4500 ± 480d >100 >100
29 Et H 87 95 6.8 14 14
30a Et H(R,R4 = CH3) 3.2 ± 0.1 259 ± 15 18 ± 4d 0.18 14
30b Et H (S, R4 = CH3) 65 ± 4 1650 ± 120 494 ± 91d 0.13 3.3
31 Et 3-F 51 ± 7 32 ± 4 10.7 ± 1.2 4.8 3.0
32 Et 3-Cl 22 ± 3 19.0 ± 0.3 1.1 ± 0.3 20 17
33 Et 3-Br 10.9 ± 1.5 6.2 ± 0.7 2.8 ± 1.9d 3.9 2.2
34 Et 3-I 7.7 ± 0.9 7.2 ± 0.6 0.88 ± 0.21 8.8 8.2
35 Et 2-NO2 31 ± 4 24 ± 3 2.8 ± 0.5 11 8.6
36 Et 3-NO2 78 ± 10 35 ± 7 8.7 ± 1.2 11 4.0
37 Et 4-NO2 49 ± 9 574 ± 64 9.0 ± 1.3 5.4 64
38 Et 3-CH3 36.5 ± 1.2 17.7 ± 1.8 1.2 ± 0.1 30 15
39 Et 2-OMe 52 ± 5 21 ± 3 7.1 ± 0.3 7.3 3.0
40 Et 3-OMe 69 ± 8 38 ± 6 4.3 ± 0.6 16 8.8
41 Et 4-OMe 209 ± 30 609 ± 34 11 ± 3 19 55
42 cyclopropyl H 112 ± 13 55 ± 6 103 ± 22 1.1 0.53
a

Displacement of specific [3H]PIA binding, unless noted, in rat brain membranes expressed as Ki ± SEM in nM (n = 3–6).

b

Displacement of specific [3H]CGS 21680 binding, unless noted, in rat striatal membranes, expressed as Ki ± SEM in nM (n = 3–6).

c

Displacement of specific binding of [125I]APNEA10 or [125I]-N6-(4-amino-3-iodobenzyl)adenosine-5′-N-methyluronamide28 from membranes of CHO cells stably transfected with the rat A3-cDNA, expressed as Ki ± SEM in nM (n = 3–5).

d

Vs[125I]-N6-(4-amino-3-iodobenzyl)adenosine-5′-N-methyluronamide.

Disubstituted N6- and 5′-uronamide derivatives of adenosine were prepared by two main routes (Figures 2 and 3).18,19The best overall yields were obtained by the route introduced by Olsson et al.18 (Figure 2). This route consisted of oxidation of 2′,3′-isopropylideneinosine, 48, followed by treatment with thionyl chloride to form at once the acid chloride and 6-chloro derivative. The acid chloride was displaced with an alkylamine, and the stable intermediate 51 was isolated, for further reaction with substituted benzyl bromides. An alternate method for preparing N6-benzyladenosines (Figure 3) consisted of the Dimroth rearrangement19 of N1-alkylated 5′-uronamidoadenosine derivatives, 55.

As with simple 5′-uronamides, the 5′-N-methylcarboxamide analogue of N6-benzyladenosine were most selective for A3 receptors (compare 12, 13, 29, and 42). 13 was 37–56-fold more selective for A3 receptors, whereas the 5′-N-cyclopropyl analogue, 42, was nonselective and much less potent. Although the 5′-N-methyl substitution was generally favored over the 5′-N-ethyl substitution, there were several exceptions, such as the 3-nitro and 3-methyl analogues, in which the potency was more favorable in the N-ethyl series (36 and 38 vs 17 and 20, respectively).

Comparisons of benzyl group substitutions were made for both the N-ethyl- and the N-methyluronamide series. The stereoselectivity of binding at A3 receptors for enantiomers at the carbon α to N6 has been demonstrated for the R- and S-isomers of N6-(phenylisopropyl)adenosine.8 As for A1 and A2a receptors,20,21 the R-isomer is favored. For the doubly modified N6-(1-phenylethyl)-5′-uronamidoadenosine analogues, 30a and 30b, the R-configuration is also favored by a factor of 27 at A3 receptors. At A1 and A2a receptors the stereoselectivity factors for R-vs S-configurations were 20-fold and 6.4-fold, respectively. Thus, A3 receptors resembles both A1 and A2a receptors in stereoselectivity at the position α to N6.

Substituents such as an electron-withdrawing group (e.g. nitro) or an electron-donating group (e.g. methoxy) were placed at each position of the benzene ring to probe electronic and positional effects of substitution. Among N6-benzyl-5′-N-ethyluronamides, selectivity for A3 vs A1 receptors ranged from 4- to 30-fold and was greatest for the 3-methyl derivative, 38. 3-Chloro-, 32, 3-methoxy-, 40, and 3-nitro-, 41, derivatives were also very selective for A3 vs A1 receptors. Selectivity for A3 vs A2a receptors ranged from 2- to 64-fold and was greatest for the 4-nitro derivative, 37, and the 4-methoxy derivative, 41. In general, positional and/or steric effects appeared to be more important than electronic effects. For example, 4-position substitution provided high selectivity for A3 vs A2a receptors in both the N-methyl (e.g. 22, 23, and 25) and N-ethyl (e.g. 37 and 41) series.

Substitution at the 3-position generally favored A3 potency and selectivity. Halo substituents were varied at the 3- and 4-positions of the benzyl substituent. 3-Halo derivatives were particularly potent. The 3- and 4-bromo derivatives in the 5′-N-methyl series, 15 and 23, respectively, were both relatively selective, but the affinity at A3 receptors was 6-fold greater with substitution at the 3-position. There was a major dependence of the affinity at all three adenosine receptors on the halo atom, and affinities of ca. 1 nM were achieved. In the 5′-N-ethyl series, the order of potency at A1 and A2a receptors was I ~ Br > Cl > F. At A3 receptors, the order was I ~ Cl > Br > F. In the 5′-N-ethyl series, the 3-iodobenzyl analogue, 34, and to a lesser degree the 3-bromo analogue, 33, were very highly potent and selective for A3 receptors. N6-(3-Iodobenzyl)adenosine-5′-N-methyluronamide, 16, displayed a Ki value of 1.0 nM at A3 receptors and selectivity versus A1 and A2a receptors of 49- and 51-fold, respectively.

Since compound 16 was both potent and selective and as such is a candidate for further pharmacological characterization, the selectivity for adenosine receptors versus other receptors was examined in a battery of radioreceptor binding assays (NovaScreen, Adheron Corporation, Hanover, MD).22 At a concentration of 10−5 M, the displacement of radioligand from α-adrenergic, β-adrenergic, dopamine (D1 and D2), serotonin 5-HT1, central benzodiazepine, amino acid (γ-aminobutyric acid; N-methyl-d-aspartate; kainate; quisqualate; and glycine, strychnine sensitive and insensitive, MK-801), peptide (angiotensin II, vasopressin, bombesin, neurokinin, central CCK, neuropeptide Y, neurotensin, somatostatin, vasoactive intestinal peptide, growth factors) receptors was insignificant (0 ± 20%). The displacement of binding of radioligand from ion channels (Ca2+, Cl, and K+) and from second messenger sites (forskolin, phorbol ester, and inositol triphosphate) and inhibition of monoamine oxidase was also insignificant. Curiously, the displacement of radioligand at serotonin 5-HT2, phencyclidene, peripepheral cholecystokinin receptors was 50–70% at 10−5 M. The observation that high affinity was not observed at any of these sites emphasizes the selectivity of compound 16 for A3 receptors.

The 3-methyl and 3-trifluoromethyl analogues, 20 and 21, respectively, were prepared in the N-methyl series. The trifluoromethyl analogue was weaker at the A3 receptors. Thus an electron-withdrawing group at the 3-position is not favorable for potency, further supported by the relatively modest potency of the 3-nitro derivative, 17. In the N-methyl series, 3- and 4-amino derivatives, 18 and 25, respectively, were prepared by treatment of the 6-chloropurine intermediate R′ = CH3), 51a, with 3- or 4-aminobenzylamine. The intermediate 3-aminobenzylamine, 57, was prepared via catalytic reduction of the 3-nitro derivative, 56 (Figure 4A). The nucleophilic attack of the purine ring occurred selectively at the arylamine. Since the arylamino derivative 25 was prepared as a precursor for radioiodination, the expected major product of direct iodination, (3-iodo-4-aminobenzyl)adenosine-5′-N-methyluronamide, 26, was prepared as a standard for purification and pharmacology. This compound proved to be less selective for A3 versus A1 receptors than the corresponding 3-iodo derivative, 16. The disubstituted benzylamine intermediate 61 (Figure 4B) was prepared via protection of the alkylamine as the tert-butyloxycarbonyl derivative. The 3-aminobenzyl derivative, 25, was also N-acetylated at the 2′,3′-isopropylidene-protected stage using acetic anhydride to yield after deprotection compound 19. This acetamido derivative demonstrated that there is an unfavorable interaction at this site on the receptor. The 3-acetamido group is unfavorable at A1 and to a lesser extent at A2a and A3 receptors. Thus, compound 19 is 72-fold and 24-fold selective for A3 vs A1 and A2a receptors, respectively.

Figure 4.

Figure 4

Synthesis of various amino- (A and B) and sulfo- (C and D) substituted benzylamine intermediates used in preparing As adenosine agonists (Figure 2).

Two sulfo analogues were prepared as a putative peripherally selective agonist, by analogy to our previous study of A1-selective sulfoadenosine derivatives.23 Synthesis of the 4-sulfo derivative, 28, required intermediate 63, which was prepared directly from benzylamine (Figure 4C). A 3-sulfo intermediate, 66, leading to adenosine derivative 27, was prepared via sulfonation of 4-bromobenzylamine followed by catalytic hydrogenation in basic medium (Figure 4D). Compound 28 weakly displaced radioligand from A3 but not A1 or A2a receptors; thus, it is a highly selective ligand. It is evident that a negative charge at the 4-benzyl position is poorly tolerated at all three receptor subtypes. The 3-sulfo derivative, 27, was slightly more potent at A3 receptors, but considerably less selective than the 4-isomer.

Conclusions

The discovery of a novel adenosine receptor has raised uncertainty concerning previous pharmacological studies using high doses of agonists thought to be selective for the A1 or A2a receptors. N6-Cyclopentyladenosine, which is ~400-fold selective for A1 versus A2a receptors is only 130-fold selective versus A3 receptors.8 CGS21680, which is ~140-fold selective for A2a versus A1 receptors, is only 39-fold selective versus A3 receptors.8 Careful use of these agents will be required in future pharmacological studies.

The SAR of N6-substituted adenosine derivatives, including N6-benzyl derivatives, has been explored at A1 and A2a receptors.24 We have found that the low potency at A1 and A2a receptors of N6-benzyladenosines is compatible with the A3-potency enhancing effects of N-alkyluronamides. 5′-N-Methyluronamides and N6-(3-substituted-benzyl)adenosines are optimal for potency and selectivity at A3 receptors.

In order to adequately define the physiological role of A3 receptors, selective agents are needed. In terms of therapeutic potential, a principal deficiency of A1- and A2a-selective agents has been their propensity for side effects,25 due to the widespread tissue distribution of these receptors. A3 receptors occur in a more limited distribution (primarily brain, heart, immune system, and testes), suggesting that A3-selective compounds may be more useful as potential therapeutic agents than agonists of other selectivities. The presence of a sulfo group on the benzyl substituent14 is expected to result in selectivity for peripheral vs central A3 receptors when compound 28 is administered in vivo.

In this study adenosine derivatives of very high affinity and/or intermediate selectivity for A3 receptors have been introduced. Compounds such as 5′-N-methyl-N6-(3-halobenzyl)adenosines and the iodinatable26 arylamines, 18 and 25, are potentially useful as pharmacological and biochemical probes for A3 receptors, to define more clearly the physiological role, distribution, and regulation of A3 adenosine receptors.

Experimental Section

Chemistry

New compounds were characterized (and resonances assigned) by 300-MHz proton nuclear magnetic resonance mass spectroscopy using a Varian GEMINI-300 FT-NMR spectrometer. Unless noted, chemical shifts are expressed as ppm downfield from tetramethylsilane. Synthetic intermediates were characterized by chemical ionization mass spectrometry (NH3) and adenosine derivatives by fast atom bombardment mass spectrometry (positive ions in a noba or m-bullet matrix) on a JEOL SX102 mass spectrometer. In the EI mode accurate mass was determined using a VG7070F mass spectrometer. C, H, and N analyses were carried out by Atlantic Microlabs (Norcross, GA), and ±0.4% was acceptable. All adenosine derivatives were judged to be homogeneous using thin-layer chromatography (silica, 0.25 mm, glass backed, Alltech Assoc., Deerfield, IL) following final purification. The following benzylamine derivatives were purchased from Aldrich (St. Louis, MO): 4-amino, 2-methoxy, 3-methyl, 3-trifluoromethyl, 3-fluoro, 3-bromo, 3-iodo, 4-chloro. 4-Nitrobenzyl bromide was purchased from Fluka (Ronkonoma, NY). 3-Nitrobenzyl bromide was purchased from Lancaster (Windham, NH). 2-Chloroadenosine and 5′-carboxamido derivatives of adenosine (compounds 3 and 4) were purchased from Research Biochemicals International (Natick, MA). Compound 1 was the gift of Dr. John W. Daly (NIH). Analytical TLC plates and silica gel (230–400 mesh) were purchased from VWR (Bridgeport, NJ).

Inosine-5′-N-methyluronamide (7)

2′,3′-Isopropylideneinosine-5′-carboxylic acid18 (51, 50 mg, 0.155 mmol), EDAC (59 mg, 0.31 mmol), and N-hydroxysuccinimide (36 mg, 0.31 mmol) were dissolved in DMF (1 mL). Methylamine (40% in water, 50 μL) was added, and the mixture was stirred for 90 min. Water was added, and the solid residue (compound 50a) was separated and dried in vacuo. Compound 50a was purified by column chromatography (silica, eluted with chloroform–methanol–25% ammonium hydroxide, 80:20:1) to yield 49.8 mg (96%) of the pure product. The isopropylidene group was removed using 0.1 N HCl, warming at 70°C for 1.5h, and neutralizing with NaHCO3. The title compound was purified by column chromatography (silica gel, chloroform–methanol–ammonium hydroxide, 80:20:1) to obtain 26 mg of the pure compound (57% yield). 1H NMR (DMSO-d6): δ 3.29 (d, J = 7.9 Hz, 3H, CH3), 4.13–4.20 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.49–4.58 (m, 1H, H-2′), 5.58 (d, J = 6.4 Hz, 1H, OH-2′), 5.68 (d, J = 4.7 Hz, 1H, OH-3′), 5.94 (d, J = 6.9 Hz, 1H, H-1′), 8.13 (s, 1H, H-2), 8.26–8.34 (m, 1H, NH-Me), 8.41 (s, 1H, H-8).

N6-Benzyladenosine-5′-N-methyluronamide (13)

2′,3′-O-Isopropylidene-6-chloropurine-5′-N-methyluronamide (51a, 30 mg, 85 μmol), benzylamine (9.7 μL, 89 μmol), and triethylamine (23.7 μL, 0.70 mmol) were dissolved in absolute ethanol (1 mL). The solution was stirred at 65 °C for 16 h in a sealed vessel. The solvent was evaporated under a stream of nitrogen, and water was added to remove the triethylammonium salt. The supernatant was removed and discarded, and the insoluble residue containing intermediate was used without further purification.

Hydrochloric acid (1 N, 1 mL) was added, and the resulting solution was heated to 60 °C for 40 min. After cooling in an ice bath, sodium bicarbonate solution was added to neutralize. The suspension was extracted with ethyl acetate, and the solvent was removed under vacuum to obtain 15 mg of the title compound (Rf = 0.69, silica TLC plate, chloroform–methanol–ammonium hydroxide 80:20:1, 46% yield overall). 1H NMR (DMSO-d6): δ 2.70 (d, J = 4.3 Hz, 3H, CH3), 4.14 (m, 1H, H-3′), 4.31 (s, 1H, H-4′), 4.59 (dd, J = 4.6 Hz, J = 7.5 Hz, 1H, H-2′), 4.71 (br s, 2H, N6-CH2Ph), 5.96 (d, J = 7.4 Hz, 1H, H-1′), 7.30 (m, 5H, phenyl), 8.29 (s, 1H, H-2), 8.43 (s, 1H, H-8), 8.56 (br s, 1H, N6H-CH2Ph), 8.86 (m, 1H, NH-Me).

N6-(3-Iodobenzyl)adenosine-5′-N-methyluronamide (16)

2′,3′-O-Isopropylidene-N-methyl-6-chloropurine-5′-uronamide (51a, 35 mg, 99 μmol), 3-iodobenzylamine hydrochloride (28 mg, 104 μmol), and triethylamine (41 μL, 0.30 mmol) were dissolved in absolute ethanol (1 mL). The solution was stirred at 75 °C for 16 h in a sealed vessel. The solvent was evaporated under a stream of nitrogen, and water was added to remove the triethylammonium salt. The supernatant was removed and discarded, and the insoluble residue containing intermediate 52a (R = 3-iodobenzyl) was used without further purification.

Hydrochloric acid (1 N, 1 mL) was added, and the resulting solution was heated to 60 °C for 4 h. After cooling in an ice bath, sodium bicarbonate solution was added to neutralize. A white solid formed and was filtered, washed with water, and dried to give 28 mg of the title compound (Rf = 0.74, silica TLC plate, chloroform–methanol–ammonium hydroxide, 80:20:1, 55% yield overall). 1H NMR (DMSO-d6): δ 2.70 (d, J = 4.6 Hz, 3H, CH3), 4.11–4.18 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.54–4.63 (m, 2H, H-2′), 4.67 (br s, 2H, N6-CH2Ph), 4.96 (br s, 2H, NH2), 5.53 (d, J = 6.4 Hz, 1H, OH-2′), 5.71 (d, J = 4.1 Hz, 1H, OH-3′), 5.97 (d, J = 7.6 Hz, 1H, H-1′), 7.10 (t, J = 7.7 Hz, 1H), 7.35 (d, J = 7.7 Hz, 1H), 7.58 (d, J = 7.8 Hz, 1H), 7.72 (s, 1H), 8.29 (s, 1H, H-2), 8.44 (s, 2H, H-8), 8.56 (br s, 1H, N6H-CH2Ph), 8.80–8.89 (m, 1H, NH-Me).

N6-(3-Aminobenzyl)adenosine-5′-N-methyluronamide (18)

Compound 51a (100 mg, 0.28 mmol) was dissolved in ethanol (1.5 mL) and treated with 3-aminobenzylamine hydrochloride (57, 47 mg, 0.30 mmol) and triethylamine (117 μL, 0.84 mmol). The solution was heated at 80 °C for 12 h in an oil bath. The solvent was evaporated, leaving a solid residue. The residue was treated with 1 N HCl (1.0 mL) and the mixture heated at 80 °C for 45 min. Sodium bicarbonate solution was added until pH 7, and the mixture was extracted three times with ethyl acetate. The solvent was removed under vacuum, and the residue was recrystallized from methanol–water to provide 56 mg of the pure product (50% yield). 1H NMR (DMSO-d6): δ 2.70 (d, J = 4.5 Hz, 3H, CH3), 4.11–4.14 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.54–4.64 (m, 3H, H-2′, N6-CH2Ph), 4.96 (br s, 2H, NH2), 5.53 (d, J = 6.7 Hz, 1H, OH-2′), 5.72 (d, J = 3.9 Hz, 1H, OH-3′), 5.96 (d, J = 7.7 Hz, 1H, H-1′), 6.38 (d, J = 7.9 Hz, 1H), 6.46 (d, J = 7.7 Hz, 1H), 6.50 (s, 1H), 6.91 (t, J = 7.8 Hz), 8.28 (s, 1H, H-2), 8.40 (s, 2H, H-8, N6H-CH2Ph), 8.87–8.97 (m, 1H, NH-Me).

N6-(3-Acetamidobenzyl)adenosine-5′-N-methyluronamide (19)

2′,3′-O-Isopropylidene-6-chloropurine-5′-N-methyluronamide (51a, 25 mg, 71 μmol), 3-aminobenzylamine hydrochloride (57, 11.3 mg, 71 μmol), and triethylamine (29 μL, 0.21 mmol) were dissolved in absolute ethanol (1 mL). The solution was stirred at 85 °C overnight in a sealed vessel. The solvent was evaporated under a stream of nitrogen and dried in vacuo. DMF (0.5 mL) was added followed by triethylamine (25 μL, 0.34 mmol) and acetic anhydride (32 μL, 0.34 mmol). After 30 min the reaction was complete. The solvent was removed under nitrogen, and a preparative TLC was performed (silica, CHCl3–MeOH, 90:10) to recover 22 mg (46 mmol, 64% yield for both steps) of the isopropylidene derivative. 1H NMR (CDCl3): δ 1.34 (s, 3H, CH3), 1.62 (s, 3H, CH3), 2.13 (s, 3H, COCH3), 2.61 (d, J = 4.9 Hz, 3H, NHCH3), 4.71 (s, 1H, H-4′), 4.83 (br s, 2H, N6-CH2Ph), 5.33 (s, 2H, H-2′ H-3′), 6.00 (s, 1H, H-1′), 6.75 (br s, 1H, NH-COCH3), 7.09 (d, J = 7.6 Hz, 1H), 7.25 (t, J = 7.8 Hz, 1H), 7.41 (d, J = 7.8 Hz, 1H), 7.55 (s, 1H), 7.70 (s, 1H, H-2), 7.75 (s, 1H, H-8), 8.32 (br s, 1H, NHCH3).

A 13-mg (27-μmol) sample of the latter compound was dissolved in 1 N HCl (0.5 mL) and warmed for 1 h at 70 °C. After cooling in an ice bath, sodium bicarbonate was added to neutralize. A solid crystallized after standing overnight at 4 °C, filtered, washed with water, and dried to give 11 mg (93% yield) of the title compound. A sample was purified by preparative TLC (silica gel, chloroform–methanol–ammonium hydroxide, 80:20:1) for microanalysis. 1H NMR (DMSO-d6): δ (s, 3H, COCH3), 2.71 (d, J = 4.3 Hz, 3H, NHCH3), 4.13 (m, 1H, H-3′), 4.31 (s, 1H, H-4′), 4.58 (m, 1H, H-2′), 4.67 (m, 2H, N6-CH2Ph), 5.53 (d, J = 6.2 Hz, 1H, OH-2′), 5.72 (d, J = 4.2 Hz, 1H, OH-3′), 5.97 (d, J = 7.4 Hz, 1H, H-1′), 7.00 (d, J = 7.3 Hz, 1H), 7.19 (t, J = 7.8 Hz, 1H), 7.45 (s, 1H), 7.49 (d, J = 7.9 Hz, 1H), 8.28 (s, 1H, H-2), 8.42 (s, 1H, H-8), 8.52 (m, 1H, N6H-CH2Ph), 8.90 (m, 1H, NHCH3), 9.85 (s, NHCOCH3).

N6-(3-(Trifluoromethyl)benzyl)adenosine-5′-N-methyluronamide (21)

The compound was prepared as described above for 16 using 3-(trifluoromethyl)benzylamine in 60% yield, except that due to aqueous insolubility, the hydrolysis on the isopropylidene protecting group was carried out in a 1:1 mixture of 1 N HCl and methanol. 1H NMR (DMSO-d6): δ 2.70 (d, J = 4.5 Hz, 3H, CH3), 4.12–4.17 (m, 1H, H-3′), 4.30 (d, J = 1.2 Hz, 1H, H-4′), 4.54–4.64 (m, 1H, H-2′), 4.78 (br s, 2H, N6-CH2Ph), 5.53 (d, J = 6.4 Hz, 1H, OH-2′), 5.72 (d, J = 4.3 Hz, 1H, OH-3′), 5.97 (d, J = 7.5 Hz, 1H, H-1′), 7.49–7.61 (m, 2H), 6.65 (d, J = 7.2 Hz, 1H), 7.71 (s, 1H), 8.29 (s, 1H, H-2), 8.45 (s, 1H, H-8), 8.64 (br s, 1H, N6H-CH2Ph), 8.80–8.88 (m, 1H, NH-Me).

N6-(4-Amino-3-iodobenzyl)adenosine-5′-N-methyluronamide (26)

2′,3′-O-Isopropylidene-N-methyl-6-chloropurine-5′-uronamide (51a, 22.2 mg, 63 μmol) and 4-amino-3-iodobenzylamine trifluoroacetate (61, 63 μmol) were dissolved in absolute ethanol (1 mL). Triethylamine was added (80 mL), and the solution was stirred at 70 °C overnight. Ethanol was removed under nitrogen. Water (1 mL) was added and then removed from the resulting solid using a Pasteur pipette. The amorphous solid was dissolved in 1 N HCl and stirred at 70 °C for 1 h. After cooling the solution was neutralized with NaHCO3 and then extracted with ethyl acetate (7 × 2 mL). After removal of the solvent in vacuo, the product was purified by column chromatography (silica, CHCl3–MeOH–NH4OH, 85:10:0.5) to obtain 17 mg (32 μmol, 51% yield overall). 1H NMR (DMSO-d6): δ 2.71 (d, J = 4.6 Hz, 3H, NHCH3), 4.14 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.51 (br s, 2H, N6-CH2Ph), 4.58 (m, 1H, H-2′), 5.07 (s, 2H, NH2), 5.52 (d, J = 6.4 Hz, 1H, OH-2′), 5.71 (d, J = 4.2 Hz, 1H, OH-3′), 5.95 (d, J = 7.6 Hz, 1H, H-1′), 6.67 (d, J = 8.1 Hz, 1H), 7.08 (dd, J = 8.3 Hz, J = 1.7 Hz, 1H), 7.56 (d, J = 1.5 Hz, 1H), 8.30 (s, 1H, H-2), 8.36–8.41 (m, 2H, H-8, N6H-CH2Ph), 8.90 (m, 1H, NHCH3).

N6-(3-Sulfobenzyl)adenosine-5′-N-methyluronamide Triethylammonium Salt (27)

A suspension of 2′,3′-O-isopropylidene-6-chloropurine-5′-N-methyluronamide (51a, 40 mg, 113 μmol), 3-sulfobenzylamine (66, 21.2 mg, 113 μmol), and triethylamine (47 μL, 0.339 mmol) in absolute ethanol (1 mL) was stirred at 90 °C overnight in a sealed vessel. The solvent was removed under nitrogen, and the isopropylidene derivative was purified by column chromatography (silica, CHCl3–MeOH-NH4–OH, 80:20:1). The isolated homogeneous band was dissolved in 1 N HCl and warmed at 65 °C for 30 min. The solvent was removed under nitrogen. The title compound was purified using reverse phase cartridges (Alltech Maxiclean, 900 mg) to obtain 38 mg (59% overall yield) as the triethylammonium salt. 1H NMR (DMSO-d6): δ 1.16 (t, J = 7.1 Hz, 9H, (CH3CH2)3NH+), 2.70 (d, J = 4.6 Hz, 3H, NHCH3), 3.09 (m, 6H, (CH3CH2)3NH), 4.13 (d, J = 4.3 Hz, 1H, H-3′), 4.29 (s, 1H, H-4′), 4.59 (dd, J = 4.6 Hz, J = 7.6 Hz, 1H, H-2′), 4.73 (m, 2H, N6-CH2Ph), 5.62 (br s, 2H, OH), 5.95 (d, J = 7.6 Hz, 1H, H-1′), 7.25 (m, 2H), 7.43 (d, J = 7.6 Hz, 1H), 7.60 (s, 1H), 8.29 (s, 1H, H-2), 8.42 (s, 1H, H-8), 8.63 (br s, 1H, N6H-CH2Ph), 8.93 (m, 2H, NHCH3, (CH3CH2)3NH+).

N6-(4-Sulfobenzyl)adenosine-5′-N-methyluronamide (28)

Compound 51a (30 mg, 85 μmol), p-sulfobenzylamine (63, 17 mg, 90 μmol), and triethylamine (34 μL, 0.27 mmol) were combined in absolute ethanol (1 mL) and heated to 90 °C for 3 days. The mixture was filtered, and the filtrate was reduced in volume by evaporation, leaving a viscous syrup. The isopropylidene-protected intermediate was purified (23.5 mg, recovered) on a TLC plate run in chloroform–methanol–acetic acid (85:10:5). Hydrochloric acid (1 mL, 1 N) was added, and the solution was warmed at 60 °C for 40 min. After cooling and evaporation of the solvent, methanol and ethyl acetate were added. The resulting preciptate was separated and dried to provide 14.3 mg (29% yield) of the title compound. A sample was purified by preparative TLC (chloroform–methanol–ammonium hydroxide, 70:30:1) for microanalysis. 1H NMR (DMSO-d6): δ 2.69 (d, J = 43.5 Hz, 3H, NHCH3), 4.15 (d, J = 4.5 Hz, 1H, H-3′), 4.32 (s, 1H, H-4′), 4.58 (dd, J = 4.6 Hz, J = 7.2 Hz, 1H, H-2′), 4.71 (br s, 2H, N6-CH2Ph), 5.98 (d, J = 7.4 Hz, 1H, H-1′), 7.27 (d, J = 7.8 Hz, 1H), 7.51 (d, J = 8.1 Hz, 1H), 8.33 (s, 1H, H-2), 8.50 (br s, 2H, H-8, N6H-CH2Ph), 8.82 (br s, 1H, NHCH3).

(R)-N6-(1-Phenylethyl)adenosine-5′-N-ethyluronamide (30a)

2′,3′-O-Isopropylidene-6-chloropurine-5′-N-ethyluronamide (51b, 30 mg, 81 μmol), (R)-(+)-α-methylbenzylamine (11.1 μL, 86 μmol), and triethylamine (22 μL, 162 μmol) were dissolved in absolute ethanol (1 mL). The solution was stirred at 80 °C for 24 h in a sealed vessel. The solvent was removed under nitrogen. HCl (1 N) (0.5 mL) was added and the solution stirred at 60 °C for 30 min. After cooling, NaHCO3 was added until pH 7, and the solution was extracted with ethyl acetate (4 × 2 mL). The organic layers were combined, and the solvent was evaporated, leaving 20 mg (48 μmol, 60% yield overall) of the title compound. A sample was purified by preparative TLC for microanalysis, as described for compound 19. 1H NMR (DMSO-d6): δ 1.05 (t, J = 7.1 Hz, 3H, CH3), 1.53 (d, J = 6.8 Hz, 3H, CHCH3), 3.15–3.28 (m, 2H, CH2), 4.08–4.17 (m, 1H, H-3′), 4.28 (s, 1H, H-4′), 4.54–4.63 (m, 1H, H-2′), 5.46–5.57 (m, 2H, OH-2′ N6-CHPh), 5.72 (d, J = 4.3 Hz, 1H, OH-3′), 5.94 (d, J = 7.3 Hz, 1H, H-1′), 7.13–7.22 (m, 1H), 7.28 (t, J = 7 Hz, 2H), 7.44 (d, J = 7.7 Hz, 2H), 8.21 (s, 1H, H-2), 8.42 (br s, 2H, H-8, N6HCH2Ph), 8.83 (m, NH-Et).

(S)-N6-(1-Phenylethyl)adenosine-5′-N-ethyluronamide (30b)

Same procedure as above using (S)-(—)-α-methylbenzylamine. 1H NMR (DMSO-d6): δ 1.05 (t, J = 7.0 Hz, 3H, CH3), 1.54 (d, J = 7.2 Hz, 3H, CHCH3), 3.15–3.26 (m, 2H, CH2), 4.08–4.15 (m, 1H, H-3′), 4.28 (s, 1H, H-4′), 4.54–4.63 (m, 1H, H-2′), 5.46–5.58 (m, 2H, OH-2′, N6-CHPh), 5.72 (d, J = 4.0 Hz, 1H, OH-3′), 5.94 (d, J = 7.8 Hz, 1H, H-1′), 7.13–7.22 (m, 1H), 7.28 (t, J = 7 Hz, 2H), 7.43 (d, J = 7.7 Hz, 2H), 8.21 (s, 1H, H-2), 8.41 (br s, 2H, H-8, N6H-CH2Ph), 8.87 (m, NH-Et).

N6-(3-Fluorobenzyl)adenosine-5′-N-ethyluronamide (31)

2′,3′-O-Isopropylidene-6-chloropurine-5′-N-ethyluronamide (51b, 30 mg, 81 μmol) and 3-fluorobenzylamine (10.8 mg, 86 μmol) were dissolved in absolute ethanol (1 mL). Triethylamine (17 μL, 0.12 mmol) was added, and the solution was warmed at 80 °C for 16 h in a sealed vessel. No starting material (Rf = 0.41, silica TLC plates, chloroform–methanol, 95:5) remained in the mixture. The solvent was evaporated under a stream of nitrogen, and water was added to remove the triethylammonium salt. The supernatant was removed and discarded, and the insoluble residue containing intermediate 52b (R = 3-fluorobenzyl) was used without further purification.

For removal of the isopropylidene group, hydrochloric acid (1 N, 1 mL) was added, and the resulting solution was heated to 60 °C for 45 min or until complete as judged by TLC. The intermediate 52b and product displayed Rf values of 0.51 and 0.10, respectively (silica, chloroform–methanol, 95:5). After cooling, sodium bicarbonate solution was added to neutralize. A white solid precipitated and was filtered, washed with water, and dried to give 23 mg of the title compound (68% yield overall). 1H NMR (DMSO-d6): δ 1.06 (t, J = 7.2 Hz, 3H, CH3), 3.20 (m, 2H, CH2), 4.00–4.16 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.56–4.64 (m, 1H, H-2′), 4.71 (br s, 2H, N6-CH2Ph), 5.53 (d, J = 6.4 Hz, 1H, OH-2′), 5.73 (d, J = 4.3 Hz, 1H, OH-3′), 5.97 (d, J = 7.4 Hz, 1H, H-1′), 7.03 (dt, J = 8.6 Hz, J = 2.0 Hz, Hbenzyl-5), 7.14 (d, J = 12.7 Hz, Hbenzyl-2), 7.17 (d, J = 8.3 Hz, Hbenzyl-6), 7.33 (dd, J = 14.0 Hz, J = 7.9 Hz, Hbenzyl-4), 8.26 (s, 1H, H-2), 8.44 (s, 1H, H-8), 8.9 (br s, 1H, N6H-CH2Ph), 8.83 (t, J = 5.6 Hz, 1H, NH-Et).

N6-(3-Chlorobenzyl)adenosine-5′-N-ethyluronamide (32)

To a solution of NECA (50 mg, 0.162 mmol) in DMF (1 mL) was added 3-chlorobenzyl bromide (61 μL, 0.47 mmol), and the solution was stirred in a closed vessel for 2 days at 40 °C. DMF was evaporated under a stream of nitrogen. The residue was treated with acetone (1 mL), and ether (2 mL) was added. The solvent was removed using a Pasteur pipette, and the residue, an amorphous solid, was again extracted with chloroform to remove traces of the benzyl bromide. The dried residue was treated with methanol (2.0 mL), and concentrated NH4OH (4.0 mL) was added. The mixture was warmed in a closed tube at 90 °C for 2 h with stirring. The mixture was reduced in volume by evaporation and cooled in an ice bath, resulting in precipitation of the chromatographically pure product. The white solid was isolated by filtration to give 43 mg (62% yield) of product which melted at 199–200 °C. 1H NMR (DMSO-d6): δ 1.06 (t, J = 7.1 Hz, 3H, CH3), 3.14–3.25 (m, 2H, CH2), 4.11–4.16 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.56–4.64 (m, 1H, H-2′), 4.71 (br s, 2H, N6-CH2Ph), 5.53 (d, J = 6.4 Hz, 1H, OH-2′), 5.72 (d, J = 4.2 Hz, 1H, OH-3′), 5.97 (d, J = 7.6 Hz, 1H, H-1′), 7.2–7.4 (m, 4H, phenyl), 8.26 (s, 1H, H-2), 8.44 (s, 1H, H-8), 8.60 (br s, 1H, N6H-CH2Ph), 8.82 (t, J = 5.8 Hz, 1H, NH-Et). Mass spectrum (CI-NH3): m/e 433 (MH+, base).

N6-(2-Nitrobenzyl)adenosine-5′-N-ethyluronamide (35)

To a solution of NECA (51 mg, 0.165 mmol) in DMF (1 mL) was added 2-nitrobenzyl bromide (107 mg, 0.496 mmol), and the solution was stirred for 2 days at 40 °C. DMF was removed under vacuum giving a syrup that crystallized when acetone and ether were added. The solvent was removed using a Pasteur pipette, and the solid was dried in vacuo and purified by preparative TLC (silica gel, ethyl acetate—2-propanol—water, 4:1:2, upper phase, Rf = 0.25) to give compound 11 in 45% yield. 1H NMR (DMSO-d6): δ 1.04 (t, J = 6.7 Hz, 3H, CH3), 3.11–3.27 (m, 2H, CH2), 4.12–4.18 (m, 1H, H-3′), 4.30 (d, J = 2.0 Hz, 1H, H-4′), 4.49–4.57 (m, 1H, H-2′), 5.55 (s, 2H, N1-CH2Ph), 5.61 (br s, 1H, OH-2′), 5.74 (br s, 1H, OH-4′), 5.88 (d, J = 7.1 Hz, 1H, H-1′), 7.06 (s, 1H, N6H), 7.15 (d, J = 7.8 Hz, 1H, arom), 7.54 (t, J = 7.8 Hz, 1H, arom), 7.68 (t, J = 8.0 Hz, 1H, arom), 8.10 (d, J = 7.5 Hz, 1H, arom), 8.26 (s, 1H, H-2), 8.29 (s, 1H, H-8), 8.43 (t, J = 5.6 Hz, 1H, NH-Et).

Methanol (2.0 mL) and concentrated NH4OH (2.0 mL) were added to compound 11, and the mixture was warmed in a closed vessel at 90 °C for 45 min. The solvent was evaporated, and the product was purified by preparative TLC (silica gel, ethyl acetate–2-propanol–water, 4:1:2, upper phase, Rf = 0.77) to give 25 mg of the title compound (34% yield overall). Mp: 181 °C dec. A sample was recrystallized from 2-propanol–ethyl ether for microanalysis. 1H NMR (DMSO-d6): δ 1.05 (t, J = 7.4 Hz, 3H, CH3), 3.13–3.24 (m, 2H, CH2), 4.09–4.16 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.56–4.63 (m, 1H, H-2′), 4.94–5.13 (m, 2H, N6-CH2Ph), 5.54 (d, J = 7.0 Hz, 1H, OH-2′), 5.73 (d, J = 4.5 Hz, 1H, OH-4′), 5.97 (d, J = 7.7 Hz, 1H, H-1′), 7.46–7.59 (m, 2H, arom), 7.67 (t, J = 7.1 Hz, 1H, arom), 8.04 (d, J = 7.6 Hz, 1H, arom), 8.21 (s, 1H, H-2), 8.47 (s, 1H, H-8), 8.62 (m, 1H, N6H-CH2Ph), 8.80 (t, J = 5.5 Hz, 1H, NH-Et).

N6-(3-Nitrobenzyl)adenosine-5′-N-ethyluronamide (36)

The title compound was synthesized in 55% yield, according the procedure for compound 35, using instead 3-nitrobenzyl bromide as starting material. 1H NMR (DMSO-d6): δ 1.06 (t, J = 7.1 Hz, 3H, CH3), 3.11–3.24 (m, 2H, CH2), 4.11–4.14 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.56–4.62 (m, 1H, H-2′), 4.82 (br s, 2H, N6-CH2Ph), 5.54 (d, J = 6.5 Hz, 1H, OH-2′), 5.73 (d, J = 4.3 Hz, 1H, OH-3′), 5.97 (d, J = 7.3 Hz, 1H, H-1′), 7.61 (t, J = 8.0 Hz, 1H), 7.72 (d, J = 7.4 Hz, 1H), 7.95 (d, J = 7.6 Hz, 1H), 8.22 (br s, 1H), 8.26 (s, 1H, H-2), 8.46 (s, 1H, H-8), 8.68–8.76 (m, 1H, N6H-CH2Ph), 8.82 (t, J = 5.5 Hz, 1H, NH-Et).

N6-(4-Nitrobenzyl)adenosine-5′-N-ethyluronamide (37)

To a solution of NECA (50 mg, 0.162 mmol) in DMF (0.5 mL) was added 4-nitrobenzyl bromide (53 mg, 0.245 mmol), and the solution was stirred for 2 days at 40 °C. DMF was removed in vacuo giving a syrup that crystallized when acetone and ether were added. The solvent was removed using a Pasteur pipette, and the solid was dried in vacuo and purified by preparative TLC (silica gel, ethyl acetate—2-propanol—water, 4:1:2, upper phase) to give compound 10 in 60% yield. 1H NMR (DMSO-d6): δ 1.06 (t, J = 7 Hz, 3H, CH3), 3.20 (q, J = 7.2 Hz, 2H, CH2), 4.12–4.18 (br s, 1H, H-3′), 4.29 (s, 1H, H-4′), 4.47–4.56 (m, 1H, H-2′), 5.39 (s, 2H, N1-CH2Ph), 5.57 (d, J = 6.3 Hz, 1H, OH-2′), 5.69 (d, J = 4.5 Hz, 1H, OH-3′), 5.87 (d, J = 7.3 Hz, 1H, H-1′), 7.58 (d, 2H, J = 8.7 Hz, arom), 8.19 (d, 2H, J = 8.8 Hz, arom), 8.27 (s, 1H, H-2), 8.37 (s, 1H, H-8). FAB+ (m-bullit): m/e 444 (MH+).

Methanol (1.0 mL) and concentrated NH4OH (2.0 mL) were added to compound 10, and the mixture was warmed in a closed vessel at 90 °C for 45 min. The solvent was evaporated, and the product was purified by preparative TLC (silica gel, ethyl acetate—2-propanol—water, 4:1:2, upper phase) to give 21 mg of the pure product (Rf = 0.77, 49% yield). Mp: 196 °C dec. 1H NMR (DMSO-d6): δ 1.06 (t, J = 7.3 Hz, 3H, CH3), 3.14–3.24 (m, 2H, CH2), 4.11–4.17 (m, 1H, H-3′), 4.30 (s, 1H, H-4′), 4.56–4.65 (m, 1H, H-2′), 4.82 (br s, 2H, N6-CH2Ph), 5.55 (d, J = 6.3 Hz, 1H, OH-2′), 5.73 (d, J = 4.2 Hz, 1H, OH-3′), 5.97 (d, J = 7.5 Hz, 1H, H-1′), 7.58 (d, 2H, J = 8.6 Hz, arom), 8.17 (d, 2H, J = 8.7 Hz, arom), 8.25 (s, 1H, H-2), 8.46 (s, 1H, H-8), 8.70 (br s, 1H, N6H-CH2Ph), 8.81 (t, J = 5.6 Hz, 1H, NH-Et). Mass spectrum (CI-NH3): m/e 444 (MH+, base).

N6-(4-Methoxybenzyl)adenosine-5′-N-ethyluronamide (41)

To a solution of NECA (50 mg, 0.162 mmol) in DMF (0.5 mL) was added 4-methoxybenzyl chloride (33 μL, 0.24 mmol), and the solution was stirred for 3 days at 40 °C. DMF was removed in vacuo, giving a syrup that crystallized when acetone and ether were added. The solvent was removed using a Pasteur pipette. Methanol (1.0 mL) and concentrated NH4OH (2.0 mL) were added, and the mixture was warmed in a closed vessel at 90 °C for 45 min. The solvent was evaporated, and the product was purified by preparative TLC (silica gel, ethyl acetate—2-propanol—water, 4:1:2) to give 4.9 mg of the pure product which crystallized from methanol (Rf = 0.82, 14% yield). 1H NMR (DMSO-d6): δ 1.07 (t, J = 7.5 Hz, 3H, CH3), 3.2 (m, 2H, CH2), 3.69 (s, OCH3), 4.12 (d, J = 5.1 Hz, 1H, H-3′), 4.29 (s, 1H, H-4′), 4.59 (dd, J = 7.6 Hz, J = 4.7 Hz, 1H, H-2′), 4.63 (br s, 2H, N6-CH2Ph), 5.96 (d, J = 7.7 Hz, 1H, H-1′), 6.84 (d, J = 8.5 Hz, 2H, arom), 7.27 (d, J = 8.7 Hz, 2H, arom), 8.25 (s, 1H, H-2), 8.40 (s, 1H, H-8), 8.45 (br s, 1H, N6H-CH2Ph), 8.87 (t, J = 4.9 Hz, 1H, NH-Et). Mass spectrum (CI-NH3): m/e 429 (MH+, base).

N6-Benzyladenosine-5′-N-cyclopropyluronamide (42)

To a solution of adenosine-5′-N-cyclopropyluronamide (20 mg, 0.062 mmol) in anhydrous DMF (1 mL) was added benzyl bromide (22 μL, 0.19 mmol), and the solution was stirred for 60 h at 40 °C. DMF was removed in vacuo, giving a syrup that crystallized when acetone and ether were added. The solvent was removed by decantation. Methanol (0.5 mL) and concentrated NH4OH (2.0 mL) were added, and the mixture was warmed in a closed vessel at 90 °C for 2 h. The mixture was reduced in volume by evaporation and cooled in an ice bath, resulting in precipitation of the chromatographically pure product. The white solid was isolated by filtration, washed with water, and dried to give 15 mg (59% yield) of product which melted at 178–180 °C. 1H NMR (DMSO-d6): δ 0.46 (m, 2H, CH2), 0.69 (m, 2H, CH2), 2.70 (m, 1H, CH3), 4.13 (m, 1H, H-3′), 4.27 (s, 1H, H-4′), 4.57 (m, 1H, H-2′), 4.71 (br s, 2H, N6-CH2Ph), 5.53 (d, J = 6.5 Hz, 1H, OH-2′), 5.73 (d, J = 4.1 Hz, 1H, OH-3′), 5.95 (d, J = 7.5 Hz, 1H, H-1′), 7.15–7.43 (m, 5H, phenyl), 8.22 (s, 1H, H-2), 8.42 (s, 1H, H-8), 8.56 (br s, 1H, N6H-CH2Ph), 8.88 (d, J = 3.8 Hz, 1H, NH-Me).

2′,3′-Isopropylideneadenosine-5′-carboxylic Acid (44)

2′,3′-Isopropylideneadenosine (43, Aldrich Chemical Co., St. Louis, MO, 0.5 g, 1.6 mmol) was dissolved in glacial acetic acid (11 mL), and chromium trioxide (0.222 g, 2.22 mmol) was added. A brown suspension formed, and the color changed gradually to dark green. The suspension was stirred at room temperature for 4 days. The dark solid formed was filtered, washed with water, and crystallized from MeOH to afford a white solid (0.28 g, 54 % yield): mp 257 °C; 1H NMR (DMSO-d6): δ 8.24 (s, 1H, H-8), 8.08 (s, 1H, H-2), 7.28 (br s, 2H, NH2), 6.33 (s, 1H, H-1′), 5.50 (ABq, 2H, H-2′, H-3′), 4.68 (s, 1H, H-4′), 1.52, 1.35 (s, 3H, Me) ppm. High-resolution MS calcd for C13H15N5O5 321.1058, found 321.1073. IR (KBr): ν 3000, 1706 cm−1.

Methyl 2′,3′-Isopropylideneadenosine-5′-carboxylate (45)

An excess of diazomethane in ether (0.75 M) was added dropwise over 0.5 h to a suspension of compound 44 (0.22 g, 0.68 mmol) in dioxane-MeOH (1:1, 50 mL) until a clear yellowish solution was obtained. The reaction mixture was stirred at room temperature for 1.5 h. Nitrogen was bubbled through the solution until the yellow color disappeared. The solvent was removed, and the product was dried under high vacuum to produce a white solid (0.211 g, 92% yield): mp 221–222 °C; 1H NMR (DMSO d6) δ 8.25 (s, 1H, H-8), 8.05 (s, 1H, H-2), 7.32 (s, 2H, NH2), 6.38 (s, 1H, H-1′), 5.61 (d, J = 6 Hz, 1H, H-2′), 5.43 (d, J = 6 Hz, 1H, H-3′), 4.85 (s, 1H, H-4′), 3.29 (s, 3H, CO2Me), 1.51, 1.34 (s, 3H, Me) ppm. High-resolution MS caled for C14H17N5O5 335.1238, found 335.1230.

2′,3′-Isopropylidene-6-chloropurine-5′-methyluronamide (51a)

2′,3′-Isopropylideneinosine-5′-carboxylic acid18 (1.1 g, 3.4 mmol) was added to a solution of thionyl chloride (0.51 mL, 0.68 mmol) and dimethylformamide (0.26 mL) in anhydrous chloroform (43 mL, dried over Al2O3). The mixture was heated to reflux with the exclusion of moisture for 6 h. After the mixture was cooled, the solvent was removed in vacuo leaving a syrup that was dissolved in chloroform (12 mL). The solution was cooled to 0 °C, and 2 mL of methylamine dissolved in 20 mL of chloroform was added. After being stirred for 15 min at <10 °C, the solution was extracted successively with HCl (0.1 N, 3 × 60 mL), sodium bicarbonate (0.5 M, 100 mL), and water (2 × 50 mL). The organic layer was dried (MgSO4) and the sovent evaporated leaving 632 mg of the homogeneous (Rf = 0.75, chloroform–methanol–ammonium hydroxide, 80:20:1) title compound (53% yield). 1H NMR (DMSO-d6): δ 8.80 (s, 1H, purine), 8.73 (s, 1H, purine), 6.50 (s, 1H, H-1′), 5.4-5.5 (m, 2H, H-2′ and H-3′), 4.63 (s, 1H, H-4′), 2.16 (d, J = 4.7 Hz, 3H, NCH3), 1.53 (s, 3H, i-Pr), 1.34 (s, 3H, i-Pr).

3-Aminobenzylamine Hydrochloride (57)

A mixture of 3-nitrobenzylamine hydrochloride (1.0g, 5.3 mmol) and 5% Pd/C (0.25 g) in methanol (30 mL) was shaken under hydrogen gas (50 psi) for 45 min. After filtration through Celite, the solvent was removed under vacuum to obtain the product in quantitative yield. 1H NMR (MeOD): δ 3.96 (s, 2H, CH2), 6.67–6.76 (m, 3H, H-2, H-4, H-6), 7.10–7.18 (m, 1H, H-5).

4-Amino-3-iodobenzylamine (61)

Compound 59 was prepared by treatment of 4-aminobenzylamine (0.30 g, 2.45 mmol) dissolved in methanol (10 mL) with di-tert-butyl dicarbonate (0.36 g, 1.65 mmol), added in portions with stirring over 0.5 h. The solvent was evaporated, and the residue was suspended in ethyl acetate and filtered. The solution was extracted with 0.5 M NaH2PO4 (3×) and dried (Na2SO4). Removal of solvent in vacuo left a clear oil, 4-((tert-butyloxycarbonyl)amino)benzylamine (59, 79% yield), which solidified upon standing to form a solid that melted at 72–75 °C.

Compound 59 (29.6 mg, 0.133 mmol) was treated with I2 (33.8 mg, 0.133 mmol), CaCO3 (16.6 mg), and MeOH (0.4 mL), and the dark mixture was stirred at 70 °C for 6 h. After the mixture was cooled, the solvent was removed under vacuum. Saturated aqueous sodium bisulfite was added and extracted with ethyl acetate (3 × 3 mL). The organic layer was dried under vacuum, and the product was purified by preparative TLC (silica, CHCl3-MeOH, 75:1) to give 60, 22 mg of 4-((tert-butyloxycarbonyl)-amino)-3-iodobenzylamine (47% yield). 1H NMR MeOD-d3): δ 1.43 (s, 9H, t-Bu), 4.03 (s, 2H CH2Ph), 6.74 (d, 1H, J = 8.3 Hz), 7.02 (dd, 1H, J = 8.3, 1.9 Hz), 7.5 (br s, 1H).

Compound 60 was deprotected treating with trifluoroacetic acid (0.4 mL) for 10 min at room temperature. The excess of TFA was removed under nitrogen, and the residue, 4-amino-3-iodobenzylamine, was dried under vacuum and used without further purification.

4-Sulfobenzylamine (63)

Benzylamine (10.2 mL, 93 mmol) was added dropwise at 0 °C to 11% fuming H2SO4 (30 mL). After being stirred at room temperature for 30 min, the solution was warmed to 75 °C for 1 h. After cooling, the solution was poured into cold dioxane (400 mL). The solid obtained was filtered through glass and washed several times with dioxane. The compound was purified by dissolving in a minimum volume of aqueous NH4OH and then precipitating upon addition of HCl until pH 1 while cooling, to obtain 7.0 g of the homogeneous product (40% yield). 1H NMR (DMSO-d6): δ 4.02 (br s, 2H, CH2), 7.38 (d, J = 8.1 Hz, 2H), 7.62 (d, J = 8.2 Hz, 2H), 8.11 (br s, 3H, NH3+). FAB+ (glycerol): 188 (MH+).

4-Bromo-3-sulfobenzylamine (65)

4-Bromobenzylamine hydrochloride (2.0 g, 9.0 mmol) was added portionwise to 18–24% fuming H2SO4 (4 mL) while cooling at 0 °C. After being stirred at room temperature for 1 h, the wine-colored solution was warmed to 100 °C for another hour. After cooling, the solution was poured into dioxane (40 mL), and the resulting precipitate was filtered and washed several times with dioxane. The amorphous solid was dissolved in a minimum volume of 4 N NaOH and then reprecipitated following acidification with 6 N HCl. The solid was washed with water and dried to obtain 1.9 g of product (79% yield). 1H NMR (DMSO-d6): δ 3.96–4.93 (m, 2H, CH2), 7.26 (dd, J = 8.1 Hz, J = 2.3 Hz, 1H), 7.61 (d, J = 8.1 Hz, 1H), 8.05 (d, J = 2.2 Hz, 1H), 8.13 (br s, 3H, NH3+). FAB+ (thioglycerol): 266/268 (MH+).

3-Sulfobenzylamine (66)

4-Bromo-3-sulfobenzylamine (1.0 g, 3.76 mmol) was suspended in 20 mL of water, and 4 N NaOH was added until dissolution (pH = 12.5). Next, 5% Pd (C) was added, and the mixture was hydrogenated (50 psi) overnight. It was filtered through glass wool, and 12 N HCl was added until pH = 1, but no precipitate formed. Inorganic salts precipitated following addition of ethanol. The remaining solution was partially lyophilized, and the solid was filtered and dried leaving 440 mg of the pure product (63% yield). 1H NMR (DMSO-d6): δ 4.03 (q, J = 5.8 Hz, 2H), CH2), 7.33–7.38 (m, 2H), 7.57–7.63 (m, 1H), 7.78 (s, 1H), 8.13 (br s, 3H, NH3+).

Compounds 15, 17, 20, 22, 23, 25, 33, 34, and 38 were synthesized according to the procedure for compound 16, using as starting materials the correspondening benzylamines. Compounds 12, 14, 39, and 40 were synthesized according with the procedure for compound 32.

Biological Methods: Receptor Binding. Materials

F-12 (Ham’s) medium, fetal bovine serum (FBS) and penicillin/streptomycin were from Gibco BRL (Gaithersburg, MD). [125I]APNEA was prepared as descibed previously.26 [3H]R-PIA was from Amersham (Arlington Heights, IL), and [3H]CGS 21680 was from DuPont NEN (Boston, MA). Adenosine deaminase (ADA) was from Boehringer Mannheim (Indianapolis, IN). Composition of lysis buffer: 10 mM Tris/5 mM EDTA, pH 7.4 at 5 °C. 50/10/1 buffer: 50 mM Tris; 10 mM MgCl2; 1 mM EDTA, pH 8.26 at 5 °C. All other materials were from standard local sources and of the highest grade commercially available.

Cell Culture and Membrane Preparation

CHO cells stably expressing the A3 receptor6 were grown in F-12 medium containing 10% FBS and penicillin/streptomycin (100 U/mL and 100 μg/mL, respectively) at 37 °C in a 5% CO2 atmosphere. When cells had reached confluency, they were washed twice with Dulbecco’s phosphate buffer solution before dislodging after addition of 3 mL of trypsin-EDTA. For the final passage cells were grown in 150- × 50-mm tissue culture dishes. Cells were washed twice with 10 mL of lysis buffer. After addition of 5 mL of lysis buffer, cells were mechanically scraped and homogenized in an ice-cold Dounce homogenizer (20 strokes by hand). The suspension was centrifuged at 43000g for 10 min. The pellet was resuspended in the minimum volume of ice-cold 50/10/1 buffer required for the binding assay and homogenized in a Dounce homogenizer. Typically, six to eight 175-cm2 flasks were used for a 48-tube assay. Adenosine deaminase was added to a final concentration of 3 units/mL, and the suspension was incubated at 37 °C for 15 min; the membrane suspension was subsequently kept on ice until use. When large batches (ca. 100 flasks) were processed, homogenization was performed with a Polytron (Brinkman, Luzern, Switzerland) and further workup was as described above. The preparation was stored at −70 °C and retained its [125I]APNEA binding properties for at least 1 month.

Radioligand Binding

Binding of [125I]APNEA to CHO cells stably transfected with the A3 receptor clone was performed essentially as described.26 Assays were performed in 50/10/1 buffer in glass tubes and contained 100 μL of the membrane suspension, 50 μL of [125I]APNEA (final concentration 0.5 nM), and 50 μL of inhibitor. Inhibitors were routinely dissolved in DMSO and were then diluted with buffer; final DMSO concentrations never exceeded 1%. This concentration did not influence [125I]APNEA binding. Incubations were carried out in duplicate for 1 h at 37 °C and were terminated by rapid filtration over Whatman GF/B filters, using a Brandell cell harvester (Brandell, Gaithersburg, MD). Tubes were washed three times with 3 mL of buffer. Radioactivity was determined in a Beckman gamma 5500B γ-counter. Nonspecific binding was determined in the presence of 40 μM R-PIA. Ki values were calculated according to Cheng-Prusoff,27 assuming a Kd for [125I]APNEA of 17 nM.6 Alternately, [125I]-4-amino-3-iodobenzyladenosine-5′-N-methyluronamide28 was used as the radioligand (final concentration 0.1 nM, Kd = 1.6 nM) with no significant difference in Ki values compared to [125I]APNEA.

Binding of [3H]PIA to A1 receptors from rat brain membranes and of [3H]CGS 21680 to A2 receptors from rat striatal membranes was performed as described previously.8,23

Rat cerebral cortical membranes and striatal membranes were prepared18 and treated with adenosine deaminase (2 units/mL) for 30 min at 37 °C prior to storage at −70 °C. Solid samples of the adenosine derivatives were dissolved in DMSO and stored in the dark at −20 °C. The stock solutions were diluted with DMSO to a concentration of ≤0.1 mM prior to adding to the aqueous medium. The final concentration of DMSO in the assay medium was generally 2%.

At least six different concentrations spanning 3 orders of magnitude, adjusted appropriately for the IC50 of each compound, were used. IC50 values, computer-generated using a nonlinear regression formula on the GraphPAD program (Institute for Scientific Information), were converted to apparent Ki values using Kd values23 of 1.0 and 14 nM for [3H]PIA and [3H]CGS 21680 binding, respectively, and the Cheng-Prusoff equation.27

Acknowledgment

C.G. and N.M. thank the Cystic Fibrosis Foundation for financial support. The technical assistance of Ms. Qitian Pu is acknowledged.

Footnotes

Abbreviations: CGS 21680, [[2-[4-(2-carboxyethyl)phenyl]ethyl]-amino]-5′-(N-ethylcarboxamido)adenosine; DMF, N,N-dimethylformamide; DMSO, dimethyl sulfoxide; EDAC, 1-(3-(dimethylamino)propyl)-3-ethylcarbodiimide hydrochloride; NECA, 5′-(N-ethylcarboxamido)adenosine; PIA, (R)-N8-(phenylisopropyl)adenosine; Tris, tris-(hydroxymethyl)aminomethane.

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