Table 14. Oxford Nanopore mapping and error profile comparison.
BWA |
GRAPHMAP |
|||
---|---|---|---|---|
MAP-004 | MAP-006 | MAP-004 | MAP-006 | |
Error profile and coverage of SQK-MAP-006 and SQK-MAP-004 datasets mapped by either BWA or GraphMap. | ||||
error rate bin (%) |
read count by error rate bin |
|||
0 | 14 | 374 | 2 | 136 |
10 | 1975 | 7314 | 945 | 4137 |
20 | 4147 | 1416 | 2277 | 1829 |
30 | 2160 | 245 | 1950 | 1478 |
40 | 226 | 130 | 2812 | 1052 |
50 | 0 | 0 | 1212 | 729 |
60 | 0 | 0 | 344 | 237 |
70 | 0 | 0 | 35 | 27 |
80 | 0 | 0 | 0 | 0 |
90 | 0 | 0 | 0 | 0 |
total mapped reads | 8522 | 9479 | 9577 | 9625 |
depth |
#bases at depth |
|||
1 | 37385018 | 35169774 | 39664522 | 33795271 |
2 | 475745 | 446938 | 612561 | 427011 |
3 | 64330 | 71522 | 105609 | 84999 |
4 | 37049 | 34671 | 63263 | 63223 |
5 | 23206 | 21208 | 40549 | 30885 |
6 | 11790 | 17722 | 25127 | 20379 |
7 | 13281 | 8292 | 13320 | 11194 |
8 | 10757 | 5598 | 14185 | 10521 |
9 | 7136 | 7936 | 7809 | 4821 |
10 | 2284 | 2792 | 5897 | 5117 |
11 | 2981 | 3567 | 4329 | 4595 |
12 | 4739 | 3038 | 2766 | 3925 |
13 | 3858 | 2976 | 1270 | 1578 |
14 | 2537 | 3557 | 1053 | 1404 |
15 | 2117 | 2850 | 526 | 654 |
16 | 860 | 3848 | 1014 | 776 |
17 | 4148 | 1496 | 477 | 486 |
18 | 2002 | 2258 | 2510 | 1235 |
19 | 2959 | 798 | 945 | 692 |
20 | 3005 | 507 | 1242 | 208 |
21 | 1245 | 894 | 518 | 613 |
22 | 1273 | 1260 | 1720 | 480 |
23 | 530 | 510 | 1142 | 320 |
24 | 78 | 178 | 1290 | 728 |
25 | 34 | 137 | 0 | 960 |
26 | 0 | 48 | 0 | 603 |
27 | 0 | 200 | 0 | 388 |
28 | 0 | 149 | 0 | 481 |
29 | 0 | 187 | 0 | 402 |
30 | 0 | 137 | 0 | 57 |
31 | 0 | 110 | 0 | 285 |
32 | 0 | 154 | 0 | 0 |
33 | 0 | 309 | 0 | 0 |
34 | 0 | 204 | 0 | 0 |
35 | 0 | 265 | 0 | 0 |
36 | 0 | 360 | 0 | 0 |
37 | 0 | 300 | 0 | 0 |
38 | 0 | 65 | 0 | 0 |