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. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25

Table 14. Oxford Nanopore mapping and error profile comparison.

  BWA
  GRAPHMAP
  MAP-004 MAP-006 MAP-004 MAP-006
Error profile and coverage of SQK-MAP-006 and SQK-MAP-004 datasets mapped by either BWA or GraphMap.        
error rate bin (%) read count by error rate bin
     
0 14 374 2 136
10 1975 7314 945 4137
20 4147 1416 2277 1829
30 2160 245 1950 1478
40 226 130 2812 1052
50 0 0 1212 729
60 0 0 344 237
70 0 0 35 27
80 0 0 0 0
90 0 0 0 0
total mapped reads 8522 9479 9577 9625
depth #bases at depth
     
1 37385018 35169774 39664522 33795271
2 475745 446938 612561 427011
3 64330 71522 105609 84999
4 37049 34671 63263 63223
5 23206 21208 40549 30885
6 11790 17722 25127 20379
7 13281 8292 13320 11194
8 10757 5598 14185 10521
9 7136 7936 7809 4821
10 2284 2792 5897 5117
11 2981 3567 4329 4595
12 4739 3038 2766 3925
13 3858 2976 1270 1578
14 2537 3557 1053 1404
15 2117 2850 526 654
16 860 3848 1014 776
17 4148 1496 477 486
18 2002 2258 2510 1235
19 2959 798 945 692
20 3005 507 1242 208
21 1245 894 518 613
22 1273 1260 1720 480
23 530 510 1142 320
24 78 178 1290 728
25 34 137 0 960
26 0 48 0 603
27 0 200 0 388
28 0 149 0 481
29 0 187 0 402
30 0 137 0 57
31 0 110 0 285
32 0 154 0 0
33 0 309 0 0
34 0 204 0 0
35 0 265 0 0
36 0 360 0 0
37 0 300 0 0
38 0 65 0 0