Table 4.
Representative annotation of several Affymetrix probesets from the U133 plus 2.0 GeneChip
| Probeset ID | Best matches (average score) | Multiple genes | Splice variants | Related probesets | Unigene number | Gene name | Gene symbol | Entrez Gene ID |
|---|---|---|---|---|---|---|---|---|
| 201002_s_at | NM_021988 (25.0) | √ | √ | 201003_x_at 208270_s_at | Hs.381025 | Ubiquitin-conjugating enzyme E2 variant 1, transcript variant 1 | UBE2V1 | 7335 |
| NM_199144 (25.0) | 201001_s_at 210886_x_at | Hs.381025 | Ubiquitin-conjugating enzyme E2 variant 1, transcript variant 2 | UBE2V1 | 7335 | |||
| NM_022442 (25.0) | 210241_s_at 216315_x_at | Hs.381025 | Ubiquitin-conjugating enzyme E2 variant 1, transcript variant 3 | UBE2V1 | 7335 | |||
| NM_003349 (25.0) | Hs.381025 | Ubiquitin-conjugating enzyme E2 Kua-UEV isoform 2 | Kua-UEV | 387 522 | ||||
| NM_199203 (25.0) | Hs.381025 | Ubiquitin-conjugating enzyme E2 Kua-UEV isoform 1 | Kua-UEV | 387 522 | ||||
| 202039_at | NM_004740 (25.0) | √ | √ | Hs.354085 | TGFB1-induced anti-apoptotic factor 1 | TIAF1 | 9220 | |
| NM_078471 (25.0) | Hs.354085 | Myosin XVIIIA | MYO18A | 399 687 | ||||
| 206900_x_at | NM_021047 (25.0) | √ | 221625_at | Hs.407162 | Zinc finger protein 253 | ZNF253 | 56 242 | |
| hum_alu_at | ||||||||
| 206572_x_at | ||||||||
| 217547_x_at | ||||||||
| 215532_x_at | ||||||||
| 221626_at | ||||||||
| 215758_x_at | ||||||||
| 203639_s_at | NM_000141 (25.0) | √ | AFFX- hum_alu_at | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 1 | FGFR2 | 2663 | |
| NM_022969 (25.0) | 211401_s_at 203638_s_at | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 2 | FGFR2 | 2663 | |||
| NM_022970 (25.0) | 208225_at 208228_s_at | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 3 | FGFR2 | 2663 | |||
| NM_022972 (25.0) | 208234_x_at | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 5 | FGFR2 | 2663 | |||
| NM_022975 (25.0) | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 8 | FGFR2 | 2663 | ||||
| NM_023028 (25.0) | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 10 | FGFR2 | 2663 | ||||
| NM_023029 (25.0) | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 11 | FGFR2 | 2663 | ||||
| NM_023030 (25.0) | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 12 | FGFR2 | 2663 | ||||
| NM_023031 (25.0) | Hs.404081 | Fibroblast growth factor receptor 2, transcript variant 13 | FGFR2 | 2663 | ||||
| 1007_s_at | NM_001954 (25.0) | √ | 207169_x_at 210749_x_at | Hs.423573 | Discoidin domain receptor family, member 1, transcript variant 2 | DDR1 | 780 | |
| NM_013993 (25.0) | 208779_x_at | Hs.423573 | Discoidin domain receptor family, member 1, transcript variant 1 | DDR1 | 780 | |||
| NM_013994 (25.0) | Hs.423573 | Discoidin domain receptor family, member 1, transcript variant 3 | DDR1 | 780 | ||||
| 217547_x_at | NM_007153 (5.83) | √ | Hs.515712 | Zinc finger protein 208 | ZNF208 | 7757 | ||
| 211610_at | No best match | Hs.534315 | Caution, check this probeset carefully. This probeset may detect an unusual splice variant, alternate termination site, or extended transcript of core promoter element binding protein. It is also a chimeric probeset with some of the probes detecting a locus 1.7 Mb away on chromosome 10 | COPEB | 1316 |