Table 1.
Diversity statistics, median (range). Medians with different letters were significantly different (Tukey P < 0.05). Medians without letters were not subjected to pairwise comparison because the omnibus ANOVA test was not significant (P < 0.05)
| Assay | Gene-level richness | Gene-level Simpson’s diversity | Gene-level Simpson’s equitability |
|---|---|---|---|
| Metagenome | 277 (23–685)ab | 14.5 (7.8–105.4) | 0.14 (0.01–0.47)abc |
| Metagenome-UMI | 366 (34–575)ab | 23.8 (3.7–149.8) | 0.11 (0.01–0.36)ab |
| Resistome | 1074 (595–1330)cd | 59.0 (9.2–142.5) | 0.06 (0.01–0.11)acd |
| Resistome-UMI | 766 (493–1265)cd | 43.3 (16.5–144.4) | 0.06 (0.03–0.12)cd |