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. Author manuscript; available in PMC: 2020 Nov 3.
Published in final edited form as: Science. 2020 Jan 23;367(6479):eaaw3381. doi: 10.1126/science.aaw3381

Table 3: Genes correlated with cell fate in early progenitors.

List of differentially genes differentially expressed between early cells with clonal output toward each lineage in vitro (sheet 1) and in vivo (sheet 2) (related to Fig 2g,j).

Lineage Gene symbol “-log10(adj. p-val)” “log2(fold-enrichment)”
Megakaryocyte Podxl 9 0.32
Megakaryocyte Itga2b 9 0.33
Megakaryocyte Plscr2 9 0.08
Megakaryocyte Pbx1 9 0.38
Megakaryocyte Nckap1 9 0.08
Megakaryocyte Mpl 8.95 0.14
Megakaryocyte Lgals9 8.87 0.66
Megakaryocyte Nrgn 8.2 0.3
Megakaryocyte Car2 7.64 0.39
Megakaryocyte Csf2rb2 7.64 0.29
Megakaryocyte Rbpms2 7.35 0.08
Megakaryocyte Grb10 7.11 0.13
Megakaryocyte Cd9 6.99 0.37
Megakaryocyte Esam 6.92 0.08
Megakaryocyte Syne1 6.33 0.06
Megakaryocyte Tgfbr3 6.26 0.08
Megakaryocyte F2r 6.2 0.31
Megakaryocyte Slc18a2 5.27 0.14
Megakaryocyte Gata2 5.1 0.38
Megakaryocyte Hmga2 4.7 0.24
Megakaryocyte Gata1 4.43 0.07
Megakaryocyte Rab38 4.32 0.32
Megakaryocyte Pkp3 4.32 0.08
Megakaryocyte Ptp4a3 4.24 0.37
Megakaryocyte Cpox 4.23 0.13
Megakaryocyte Gsdmd 4.06 0.09
Megakaryocyte Ctla2a 4.06 0.38
Megakaryocyte Hbb-bt 3.18 0.35
Megakaryocyte Adgrg1 2.94 0.25
Megakaryocyte St3gal1 2.83 0.16
Megakaryocyte Gmpr 2.51 0.25
Megakaryocyte Dlk1 2.48 0.48
Megakaryocyte Slc14a1 2.45 0.14
Megakaryocyte Alox5 2.44 0.14
Megakaryocyte Ptgs1 2.32 0.09
Megakaryocyte Rap1b 2.23 0.31
Megakaryocyte Rab27b 2.22 0.09
Megakaryocyte S100a1 2.07 0.18
Megakaryocyte Kif22 1.93 0.12
Megakaryocyte Mis18bp1 1.93 0.17
Megakaryocyte Ak1 1.72 0.08
Megakaryocyte Rasgef1b 1.66 0.13
Megakaryocyte Myct1 1.66 0.14
Megakaryocyte C3ar1 1.65 0.09
Megakaryocyte Vamp5 1.65 0.1
Megakaryocyte Rabgap1l 1.65 0.18
Megakaryocyte E130308A19Rik 1.65 0.08
Megakaryocyte Bex4 1.58 0.1
Megakaryocyte Gng11 1.58 0.07
Megakaryocyte H1f0 1.58 0.23
Megakaryocyte Tuba8 1.58 0.09
Megakaryocyte Atxn1 1.58 0.13
Megakaryocyte Arpc4 1.49 0.23
Megakaryocyte Fdft1 1.48 0.15
Megakaryocyte Ccdc125 1.37 0.09
Megakaryocyte Serpina3g 1.37 0.35
Megakaryocyte Myh10 1.35 0.06
Megakaryocyte Muc13 1.35 0.34
Mast cell Ikzf2 3.34 0.3
Mast cell Arnt 1.77 0.2
Mast cell 1810022K09Rik 1.77 0.38
Basophil Gata2 9 0.41
Basophil Akr1c13 9 0.46
Basophil Cpa3 9 0.18
Basophil Alox5 9 0.17
Basophil Slc18a2 8.99 0.1
Basophil Ikzf2 8.99 0.17
Basophil Cyp11a1 8.98 0.14
Basophil F2r 8.06 0.19
Basophil Srgn 7.22 0.37
Basophil H2-Q7 6.59 0.29
Basophil Lgals9 6.59 0.31
Basophil Tcrg-C1 6.29 0.07
Basophil Csf2rb2 6.29 0.14
Basophil Nt5c3 4.8 0.19
Basophil Sipa1l1 4.58 0.22
Basophil Myct1 4.51 0.11
Basophil Adgrg1 4.47 0.16
Basophil Igf1r 4.28 0.17
Basophil Bnip3l 4.07 0.26
Basophil Fam46a 4.04 0.1
Basophil Serinc3 3.92 0.24
Basophil Rhoj 3.9 0.07
Basophil Csf2rb 3.82 0.15
Basophil Gzmb 3.7 0.13
Basophil Cd63 3.7 0.2
Basophil Pafah2 3.57 0.1
Basophil Nrgn 3.43 0.11
Basophil Spns2 3.27 0.11
Basophil Rab38 3.27 0.16
Basophil Ctla2a 3.14 0.19
Basophil Podxl 3.12 0.07
Basophil S100a1 3.01 0.11
Basophil Tspan32 2.96 0.03
Basophil Tbc1d9b 2.96 0.12
Basophil Ano6 2.92 0.08
Basophil Relb 2.81 0.03
Basophil Akr1c12 2.75 0.04
Basophil Pdlim5 2.63 0.08
Basophil Thy1 2.59 0.14
Basophil Cmtm7 2.48 0.19
Basophil Spns3 2.26 0.04
Basophil Cpne2 2.25 0.13
Basophil Ocrl 2.21 0.06
Basophil Rbpms2 2.18 0.03
Basophil Tjp1 2.16 0.05
Basophil Gm45051 2.07 0.02
Basophil Gdf3 2.07 0.02
Basophil Arl11 1.94 0.08
Basophil Ifitm1 1.86 0.21
Basophil Itm2c 1.76 0.1
Basophil Zdhhc15 1.75 0.03
Basophil Leprot 1.75 0.15
Basophil Zbtb9 1.75 0.04
Basophil Ctla2b 1.75 0.06
Basophil Hdc 1.68 0.08
Basophil Muc13 1.6 0.19
Basophil Mdga1 1.58 0.02
Basophil Adrbk2 1.54 0.04
Basophil Sqstm1 1.54 0.18
Basophil Maml1 1.49 0.06
Basophil Cyth3 1.46 0.03
Basophil E130308A19Rik 1.42 0.04
Basophil 8-Sep 1.39 0.07
Basophil Arap3 1.37 0.02
Basophil Uevld 1.37 0.04
Basophil Def8 1.37 0.09
Basophil Svil 1.35 0.09
Eosinophil Cpa3 9 0.52
Eosinophil Ikzf2 8.98 0.42
Eosinophil Cyp11a1 7.2 0.32
Eosinophil Akr1c13 6.54 0.51
Eosinophil Alox5 3.82 0.24
Eosinophil Rhoj 3.49 0.18
Eosinophil Rsu1 2.65 0.43
Eosinophil Chid1 1.94 0.11
Eosinophil Stom 1.46 0.13
Eosinophil Foxj2 1.46 0.11
Eosinophil Ap3s1 1.32 0.56
Neutrophil Muc13 8.91 0.28
Neutrophil Srgn 8.76 0.28
Neutrophil Ccl9 8.15 0.2
Neutrophil Elane 7.79 0.21
Neutrophil Igfbp4 7.73 0.26
Neutrophil Hk3 7.41 0.15
Neutrophil Prtn3 6.83 0.21
Neutrophil Mpo 6.46 0.13
Neutrophil Ms4a3 4.12 0.13
Neutrophil Tfec 4.12 0.1
Neutrophil Snrpf 4.07 0.21
Neutrophil Ctsg 3.81 0.18
Neutrophil Plac8 3.76 0.22
Neutrophil Rplp1 3.69 0.14
Neutrophil Cd63 3.65 0.13
Neutrophil Sell 3.43 0.09
Neutrophil Cd93 3.43 0.09
Neutrophil Thy1 3.43 0.1
Neutrophil Ap3s1 3.43 0.19
Neutrophil Clint1 3.06 0.13
Neutrophil Igf1r 2.92 0.1
Neutrophil Ifitm1 2.55 0.16
Neutrophil Clec4e 2.46 0.08
Neutrophil Pecam1 2.35 0.08
Neutrophil Myc 2.35 0.15
Neutrophil Egln3 2.23 0.1
Neutrophil Lmo2 2.23 0.13
Neutrophil Tnfrsf26 2.16 0.04
Neutrophil Gstm1 2.15 0.1
Neutrophil Rplp2 2.05 0.07
Neutrophil Calr 1.91 0.16
Neutrophil Rps10 1.8 0.13
Neutrophil Peak1 1.7 0.04
Neutrophil Gsr 1.7 0.1
Neutrophil Cd9 1.7 0.08
Neutrophil Slco3a1 1.7 0.06
Neutrophil Adgrg1 1.7 0.08
Neutrophil Itm2b 1.67 0.13
Neutrophil Gclm 1.48 0.12
Neutrophil Rpl28 1.45 0.12
Neutrophil Col4a2 1.45 0.04
Neutrophil Ndufa4 1.38 0.13
Neutrophil Pfn1 1.38 0.13
Neutrophil Tbc1d31 1.33 0.05
Neutrophil Rps15 1.32 0.1
Neutrophil Ifitm3 1.32 0.13
Neutrophil Fcer1g 1.32 0.11
Neutrophil Fam65a 1.32 0.07
Neutrophil Ppp3ca 1.31 0.07
Monocyte Rbms1 9 0.28
Monocyte Sirpa 8.75 0.19
Monocyte Set 5.88 0.2
Monocyte Tuba1b 5.73 0.22
Monocyte Tk1 5.61 0.22
Monocyte Spp1 5.59 0.09
Monocyte mt-Nd1 5.13 0.12
Monocyte Fkbp4 5 0.2
Monocyte H3f3b 4.45 0.18
Monocyte Tmem173 4.1 0.11
Monocyte Hspd1 3.87 0.18
Monocyte Slpi 3.87 0.08
Monocyte Hacd1 3.8 0.08
Monocyte Emb 3.69 0.17
Monocyte Ncl 3.57 0.17
Monocyte Nhp2l1 3.43 0.16
Monocyte Ptma 3.33 0.13
Monocyte Npm3 3.28 0.16
Monocyte Mrc1 3.24 0.08
Monocyte Casp6 3.21 0.14
Monocyte Ttf1 3.14 0.2
Monocyte Cd44 2.89 0.16
Monocyte Mapkapk2 2.89 0.15
Monocyte Cct3 2.88 0.15
Monocyte Gm37214 2.84 0.14
Monocyte Kpnb1 2.8 0.15
Monocyte Hnrnpdl 2.77 0.13
Monocyte Aco2 2.75 0.15
Monocyte 2700094K13Rik 2.74 0.15
Monocyte Rrm2 2.73 0.14
Monocyte Ccnd1 2.7 0.06
Monocyte Epb41l4b 2.62 0.07
Monocyte Cytip 2.56 0.09
Monocyte Odc1 2.45 0.13
Monocyte Il6st 2.43 0.06
Monocyte Il1r1 2.41 0.09
Monocyte Tubb5 2.37 0.14
Monocyte Pou2f2 2.37 0.08
Monocyte 2810417H13Rik 2.37 0.15
Monocyte Prtn3 2.3 0.13
Monocyte Hnrnph1 2.3 0.14
Monocyte Psme3 2.14 0.13
Monocyte D1Ertd622e 2.1 0.05
Monocyte Apex1 2.09 0.13
Monocyte Gspt1 2.09 0.13
Monocyte Eif5a 2.09 0.14
Monocyte Srm 2.07 0.13
Monocyte Dab2 2.03 0.03
Monocyte Rab33b 2.01 0.12
Monocyte Pank3 2.01 0.08
Monocyte Igsf6 1.99 0.03
Monocyte Vdac2 1.94 0.14
Monocyte Itch 1.93 0.12
Monocyte H2afy 1.9 0.12
Monocyte Cybb 1.87 0.03
Monocyte Dut 1.86 0.13
Monocyte Ran 1.85 0.13
Monocyte Ybx3 1.81 0.13
Monocyte Tmpo 1.81 0.11
Monocyte Sema6b 1.8 0.02
Monocyte Ptpn6 1.8 0.08
Monocyte Ak2 1.79 0.12
Monocyte Eif4g2 1.79 0.12
Monocyte Eif4h 1.78 0.12
Monocyte Atp5k 1.77 0.12
Monocyte Tnf 1.77 0.05
Monocyte Lmo2 1.73 0.11
Monocyte Gem 1.7 0.05
Monocyte Gjb3 1.67 0.05
Monocyte Marcksl1 1.66 0.11
Monocyte Birc5 1.66 0.1
Monocyte Zfp36 1.65 0.06
Monocyte Dock9 1.65 0.02
Monocyte Fth1 1.64 0.12
Monocyte Hspa5 1.64 0.12
Monocyte Samhd1 1.6 0.11
Monocyte Limd2 1.58 0.07
Monocyte Sh3bgrl3 1.57 0.12
Monocyte Cacybp 1.57 0.12
Monocyte Milr1 1.57 0.09
Monocyte Ube2c 1.57 0.08
Monocyte Egln1 1.54 0.07
Monocyte Kdm2b 1.45 0.07
Monocyte Pik3r5 1.44 0.02
Monocyte Cflar 1.43 0.09
Monocyte Mdh1 1.41 0.09
Monocyte Osgep 1.36 0.06
Monocyte C1qbp 1.36 0.12
Monocyte Wfdc17 1.36 0.03
Monocyte Il6ra 1.35 0.04
Monocyte Hmgcs1 1.32 0.07
Monocyte Rnf141 1.31 0.05
Dendritic cell Ly86 9 0.13
Dendritic cell Ighm 4.42 0.57
Dendritic cell Irf8 2.9 0.21
Dendritic cell Mpeg1 2.59 0.15
Dendritic cell Olfm1 2.5 0.16
Dendritic cell Tmem108 2.05 0.22
Dendritic cell Tpm4 1.76 0.34
Dendritic cell Gm7694 1.76 0.15
Dendritic cell 2810417H13Rik 1.76 0.49
Dendritic cell Ppp1r16b 1.62 0.1
Dendritic cell Il4ra 1.59 0.21
Dendritic cell Cenpu 1.51 0.09
Dendritic cell Bcl7c 1.5 0.25
Dendritic cell Gpr171 1.5 0.26
Dendritic cell H2-Aa 1.34 0.28
Dendritic cell Cd52 1.33 0.15
Dendritic cell Pkib 1.33 0.17
Lymphoid Ighm 9 0.95
Lymphoid Il12a 9 0.42
Lymphoid Ctr9 9 0.36
Lymphoid Gsn 9 0.5
Lymphoid Satb1 9 0.3
Lymphoid Cd74 9 0.36
Lymphoid Mef2c 9 0.45
Lymphoid Flt3 9 0.28
Lymphoid H2-Eb1 9 0.36
Lymphoid H2-Aa 9 0.36
Lymphoid Bcl11a 9 0.47
Lymphoid Trac 9 0.06
Lymphoid Zcchc18 8.99 0.15
Lymphoid St8sia1 8.97 0.12
Lymphoid Gcnt2 8.96 0.17
Lymphoid Cd28 8.95 0.2
Lymphoid Tmem108 8.87 0.21
Lymphoid Snn 8.85 0.14
Lymphoid Lmo4 8.83 0.41
Lymphoid Ptprcap 8.83 0.48
Lymphoid Hivep3 8 0.13
Lymphoid Tsc22d1 7.86 0.4
Lymphoid Gpr171 7.86 0.25
Lymphoid St6gal1 7.63 0.05
Lymphoid AA467197 7.37 0.07
Lymphoid Wdr26 7.09 0.36
Lymphoid Mpeg1 7.03 0.12
Lymphoid Acadm 6.56 0.28
Lymphoid Pacsin1 6.46 0.06
Lymphoid Dhrs3 6.31 0.14
Lymphoid Emp1 6.31 0.16
Lymphoid Mllt3 5.84 0.14
Lymphoid Egfl7 5.55 0.22
Lymphoid Pan3 5.27 0.23
Lymphoid Havcr2 5.14 0.14
Lymphoid H2afy 5.14 0.33
Lymphoid Hmga2 4.89 0.17
Lymphoid Hs3st1 4.75 0.09
Lymphoid Pou2f2 4.72 0.19
Lymphoid Chit1 4.67 0.06
Lymphoid Sgpl1 4.6 0.19
Lymphoid Samsn1 4.6 0.26
Lymphoid B930041F14Rik 4.26 0.08
Lymphoid Serpinb6b 4.24 0.09
Lymphoid Cd83 4.24 0.1
Lymphoid Sh3bgrl3 4.12 0.33
Lymphoid Ppp1r16b 4.12 0.07
Lymphoid Arnt2 4.05 0.06
Lymphoid Cdh1 3.87 0.07
Lymphoid Eif4g2 3.87 0.3
Lymphoid Nrm 3.86 0.12
Lymphoid Trp53i11 3.43 0.16
Lymphoid Zbtb39 3.42 0.04
Lymphoid Tox 3.37 0.1
Lymphoid Ociad2 3.31 0.1
Lymphoid Mgst2 3.31 0.07
Lymphoid Msrb3 3.31 0.07
Lymphoid 1700109H08Rik 3.3 0.08
Lymphoid P2ry14 3.26 0.13
Lymphoid Hvcn1 3.24 0.1
Lymphoid Nfkbia 3.23 0.32
Lymphoid Bcl2 3.2 0.25
Lymphoid Dntt 3.2 0.08
Lymphoid 2810417H13Rik 3.19 0.31
Lymphoid Stap1 3.1 0.11
Lymphoid Jund 3.1 0.27
Lymphoid Zfp467 3.07 0.06
Lymphoid Fam43a 2.9 0.11
Lymphoid Lasp1 2.8 0.23
Lymphoid Celf2 2.77 0.28
Lymphoid Azin2 2.77 0.09
Lymphoid Rrad 2.77 0.07
Lymphoid Rasa2 2.76 0.14
Lymphoid Bex6 2.73 0.15
Lymphoid S100a4 2.56 0.23
Lymphoid Sdc4 2.56 0.05
Lymphoid Tulp4 2.54 0.09
Lymphoid Lmna 2.53 0.1
Lymphoid Scd2 2.52 0.29
Lymphoid Ppp1r18 2.52 0.19
Lymphoid Tmem229b 2.48 0.12
Lymphoid Ncaph 2.47 0.16
Lymphoid Mmaa 2.47 0.07
Lymphoid Lgmn 2.47 0.08
Lymphoid Tspan2 2.42 0.08
Lymphoid Tmed8 2.42 0.08
Lymphoid Cnn3 2.37 0.14
Lymphoid Il21r 2.37 0.07
Lymphoid Wbp1 2.34 0.06
Lymphoid Gm7694 2.3 0.08
Lymphoid Mrc1 2.24 0.13
Lymphoid Tcf4 2.19 0.19
Lymphoid Mn1 2.17 0.05
Lymphoid Ywhab 2.17 0.24
Lymphoid Stau2 2.14 0.11
Lymphoid Gm37867 2.11 0.06
Lymphoid Tmem173 2.1 0.15
Lymphoid Tpm4 2.07 0.18
Lymphoid Ctnnd2 2.05 0.04
Lymphoid Ubl3 2.05 0.15
Lymphoid Ppdpf 2.01 0.14
Lymphoid Epb41l2 2.01 0.1
Lymphoid Gcsam 1.95 0.05
Lymphoid Dusp10 1.92 0.06
Lymphoid Ssbp3 1.92 0.13
Lymphoid Il1r1 1.91 0.15
Lymphoid Nfil3 1.83 0.08
Lymphoid mt-Co2 1.83 0.14
Lymphoid Tbc1d16 1.8 0.1
Lymphoid Arhgap4 1.79 0.05
Lymphoid Igf2bp3 1.79 0.04
Lymphoid Ifit2 1.78 0.1
Lymphoid Klhl25 1.78 0.07
Lymphoid Il27ra 1.75 0.07
Lymphoid Acat1 1.7 0.14
Lymphoid Fundc1 1.7 0.1
Lymphoid Stat3 1.7 0.17
Lymphoid H3f3a 1.69 0.23
Lymphoid Hip1 1.66 0.12
Lymphoid Ddt 1.66 0.17
Lymphoid Syngr2 1.64 0.11
Lymphoid Cd44 1.62 0.24
Lymphoid Cd96 1.61 0.06
Lymphoid Ak2 1.61 0.22
Lymphoid Sp140 1.59 0.06
Lymphoid Cd33 1.58 0.06
Lymphoid Banp 1.55 0.06
Lymphoid Ppox 1.54 0.05
Lymphoid Elk1 1.54 0.05
Lymphoid Ctsa 1.52 0.1
Lymphoid Btg1 1.52 0.11
Lymphoid Nrros 1.49 0.21
Lymphoid Marcksl1 1.49 0.2
Lymphoid Klhl20 1.49 0.06
Lymphoid Uvrag 1.48 0.09
Lymphoid Actb 1.48 0.2
Lymphoid Nckap1l 1.47 0.16
Lymphoid Ppp3cc 1.43 0.04
Lymphoid mt-Atp6 1.41 0.13
Lymphoid Sptssa 1.41 0.19
Lymphoid Tsc22d4 1.41 0.12
Lymphoid Ptpn6 1.4 0.13
Lymphoid Sh3glb1 1.39 0.18
Lymphoid Zfp236 1.38 0.08
Lymphoid Ikzf1 1.37 0.14
Lymphoid Ly6a 1.35 0.2
Lymphoid Snapc2 1.33 0.06
Lymphoid Tshz1 1.32 0.09
Lymphoid H2-Ab1 1.31 0.08
Lymphoid D5Ertd605e 1.3 0.09