Figure 4.
Minimum Ct values across all NAAT positive swabs
Ct values from positive NAATs performed at Lighthouse Laboratories using a ThermoFisher TaqPath three-gene assay. Each datapoint represents one participant. For each participant, the minimum of the Ct value for the N gene and ORF1ab gene was taken for each NAAT positive swab, and the minimum across all swabs for the same participant was calculated as a proxy for maximum viral load. Low Ct values are associated with a higher viral load. The midlines of the boxes show medians and the outer bounds of the boxes show IQRs. Error bars show the most extreme point within 1.5 × IQR above or below the 75th or 25th percentile. Ct=cycle threshold. NAAT=nucleic acid amplification test.