Table 1.
Summary of the prevalence of global lineages represented by more than one sample in the Norfolk dataset compared with the public set of genomes from GISAID and COG-UK (accessed 28 August 2020)
Norfolk |
UKa |
Globalb |
||||
---|---|---|---|---|---|---|
Lineage |
Samples |
Per cent |
Samples |
Per cent |
Samples |
Per cent |
B |
21 |
2.03 |
1021 |
2.59 |
1831 |
2.97 |
B.1 |
63 |
6.09 |
5918 |
14.99* |
13 354 |
21.63* |
B.1.1 |
464 |
44.83 |
15 654 |
39.65* |
19 424 |
31.46* |
B.1.1.1 |
11 |
1.06 |
3658 |
9.26* |
3933 |
6.37* |
B.1.1.10 |
6 |
0.58 |
295 |
0.75 |
324 |
0.52 |
B.1.1.15 |
35 |
3.38 |
45 |
0.11* |
60 |
0.97* |
B.1.1.3 |
19 |
1.84 |
100 |
0.25* |
100 |
0.16* |
B.1.1.7 |
2 |
0.19 |
157 |
0.40 |
173 |
0.28 |
B.1.105 |
7 |
0.68 |
90 |
0.23 |
90 |
0.15* |
B.1.11 |
111 |
10.72 |
793 |
2.01* |
825 |
1.34* |
B.1.111 |
11 |
1.06 |
11 |
0.03* |
18 |
0.03* |
B.1.5 |
33 |
3.19 |
997 |
2.53 |
1996 |
3.23 |
B.1.5.5 |
67 |
6.47 |
73 |
0.18* |
75 |
0.12* |
B.1.75 |
84 |
8.12 |
152 |
0.38* |
156 |
0.25* |
B.1.88 |
6 |
0.58 |
39 |
0.1* |
43 |
0.07* |
B.2 |
51 |
4.93 |
1343 |
3.40 |
1792 |
2.90* |
B.2.1 |
13 |
1.26 |
2004 |
5.08* |
2153 |
3.49* |
B.21 |
12 |
1.16 |
26 |
0.07* |
27 |
0.04* |
B.3 |
9 |
0.87 |
1000 |
2.53* |
1118 |
1.81 |
a, In this column those values marked with an asterisk are significantly more/less prevalent in Norfolk samples than UK samples (P<0.05 Bonferroni corrected for multiple hypothesis testing).
†‡b, In this column those values marked with an asterisk are significantly more/less prevalent in Norfolk samples than in global samples (P<0.05 Bonferroni corrected for multiple hypothesis testing).