TABLE 3.
Oligonucleotide primers used for ITS amplification and sequencing
Primer | Bartonella species | Nucleotide sequence (5′ to 3′) | Reference(s) |
---|---|---|---|
16SFab | All (except B. bacilliformis) | AGAGGCAGGCAACCACGGTA | 47, 48 |
23S1abc | All (except B. bacilliformis) | GCCAAGGCATCCACC | 47, 48 |
QHVE1b | All | TTCAGATGATGATCCCAA | 47, 48 |
QHVE2bc | All | TTGGGATCATCATCTGAA | 47, 48 |
QHVE3b | All | GATATATTCAGACATGTT | 47, 48 |
QHVE4bc | All | AACATGTCTGAATATATC | 47, 48 |
BABFab | B. bacilliformis | CTGGATCACCTCCTTTCTAA | This study |
BABRabc | B. bacilliformis | ATGCCCTTAAGACACTTGAT | This study |
BQFab | B. quintana | CTCCACCATTTTAGGTCATC | This study |
BQRabc | B. quintana | GGTTTTGAGAATTCCCTTGC | This study |
Primer used for PCR. The 16SF primer was chosen from a conserved region of the 3′ end of the 16S rRNA-encoding gene of Bartonella species, and the 23S1 primer was chosen from the antisense strand of the 23S rRNA-encoding gene.
Primer used to sequence the PCR amplification product.
The primer was located on the complementary strand of DNA at the same position as the primer preceding it in the table.