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. 2000 Jul;66(7):3044–3051. doi: 10.1128/aem.66.7.3044-3051.2000

TABLE 1.

Oligonucleotide probes used for FISH

Probe Specificity Probe sequence (5′–3′) Target sitea 16S rRNA positions % FAb Source or reference
ALT1413 Alteromonas, Colwellia TTTGCATCCCACTCCCAT 1413–1430 40 This study
G Rb Rhodobacter, Roseobacter GTCAGTATCGAGCCAGTGAG 645–626 30 18
G V Vibrio AGGCCACAACCTCCAAGTAG 841–822 30 18
NOR1-56 NOR1 lineage TTACCGCTCGGACTTGCA 56–73 20 This study
NOR2-1453 NOR2 cluster group A GGTCATCGCCATCCCC 1453–1468 30 This study
OCE232 Oceanospirillum AGCTAATCTCACGCAGGC 232–249 40 This study
PSA184 Pseudoalteromonas, Colwellia CCCCTTTGGTCCGTAGAC 184–210 30 This study
SAR86-1249 SAR 86 clusterc GGCTTAGCGTCCGTCTG 1249–1265 50 This study
SPH120 Sphingomonas GGGCAGATTCCCACGCGT 120–137 30 36
a

E. coli numbering (8). 

b

Percent (vol/vol) formamide (FA) in FISH buffer. 

c

Reference 35.